FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACC1 (Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain ATCC 10987) GN=pth PE=3 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.940e-38
Identity = 75/167 (44.91%), Postives = 113/167 (67.66%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEA 648
            LIVGLGNPG++Y  TRHN+GF  +D +A+   IS++   FK  FG GF+    V+L KP T+MN SG+S+  ++ YYKI ++  +V++DDLD+P  K+RL  KG  GGHNG++S I H  G++EF R+R+GI RP   M  V++VL  F+ +E   ++ + ++  +A
Sbjct:    3 LIVGLGNPGREYELTRHNIGFMAIDELAKRWNISLNEQKFKGVFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVEDFVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVDYVLGRFTSEEIPGVNHSIEKAADA 168          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ARTCA (Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=pth PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.452e-38
Identity = 81/190 (42.63%), Postives = 117/190 (61.58%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF--IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            WLIVGLGNPG QY G RHNVG  ++D +A   G    S   +A   +G   IG   V+LAKP T+MN SG  V ++ ++Y I    V+ + D++D+PF+ ++L   GG GGHNG+R  I     ++++ R+R+G+GRPPG+MD+ ++VLR F   E +EL F   +  +AV +LL EG   A    + AK
Sbjct:    5 WLIVGLGNPGAQYQGNRHNVGQMVLDELAGRVGAGFKSHKARAQVVEGRLGIGGPRVVLAKPMTYMNVSGGPVSALANFYGISPDHVVAVHDEIDIPFNTVKLKIGGGEGGHNGLRD-ISKALATKDYLRVRVGVGRPPGRMDTADYVLRDFGTAELKELPFLLDEAADAVELLLQEGLTAAQQKFHPAK 193          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2L_ORYSJ (CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.452e-38
Identity = 70/114 (61.40%), Postives = 92/114 (80.70%), Query Frame = 1
Query:  139 HPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNG 480
            +PWL VGLGNPG++Y  TRHNVGF+M+D  A+++GIS++   FKA FG+G +  VPV+LAKPQT+MN SG+SVG + +YYK+PL +VLV FDD+DLP   +RL PKGG+G HNG
Sbjct:   59 NPWLFVGLGNPGEKYQCTRHNVGFDMIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLNRVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOBA (Peptidyl-tRNA hydrolase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=pth PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 76/188 (40.43%), Postives = 121/188 (64.36%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGNPG +Y+ TRHN+GFE++D I+    I ++   FK  +G+GFI N  V+L KP T+MN SG SV  + ++YKI  + ++VI+DD+ L   ++R+  KG  GGHNG++SII +   +  FPR+++G+G+P   +  V++VL  FSK+E++ L  + +    +V  ++ +  N A    N  K
Sbjct:    2 FLIVGLGNPGSKYDNTRHNIGFEVIDNISNEYNIDINRQKFKGVYGEGFIANNKVILLKPTTYMNLSGDSVREVANFYKISNENIIVIYDDISLDIGRLRIREKGSAGGHNGIKSIIANL-STDVFPRIKVGVGQPNDNL--VDYVLGKFSKEEKEVLKESIEAATNSVEEIIKQDINSAMNKFNGFK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANAVT (Peptidyl-tRNA hydrolase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pth PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 89/194 (45.88%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFI-GNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKM-----DSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            P LIVGLGNP  +Y+ TRHN+GF  VDA+A A  IS++ +  F+  +G+G   G V + L KP T+MN SGQ++ ++ S+YK+  + VLVI+DDLDLP  K RL   G  GGHNGM+S I H   ++ FPRLRIGIG+P   +     ++V+ VL  FS  E Q +    Q  VE V + L +G  KA    N+
Sbjct:   13 PQLIVGLGNPEPKYDQTRHNIGFAAVDALARAWNISLAENRKFQGQYGEGTAPGGVKIRLLKPLTYMNRSGQAIQAVTSWYKLSGESVLVIYDDLDLPLGKTRLRLSGSAGGHNGMKSAIAHL-STQNFPRLRIGIGKPKNAVNGDNSETVSHVLGKFSATETQLMSLVLQFVVECVELSLKQGVEKAMNRCNS 205          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ANASP (Peptidyl-tRNA hydrolase OS=Anabaena sp. (strain PCC 7120) GN=pth PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 89/194 (45.88%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFI-GNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKM-----DSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            P LIVGLGNP  +Y+ TRHN+GF  VDA+A A  IS++ +  F+  +G+G   G V + L KP T+MN SGQ++ ++ S+YK+  + VLVI+DDLDLP  K RL   G  GGHNGM+S I H   ++ FPRLRIGIG+P   +     ++V+ VL  FS  E Q +    Q  VE V + L +G  KA    N+
Sbjct:    3 PQLIVGLGNPEPKYDQTRHNIGFAAVDALARAWNISLAENRKFQGQYGEGTAPGGVKIRLLKPLTYMNRSGQAIQAVTSWYKLSGESVLVIYDDLDLPLGKTRLRLSGSAGGHNGMKSAIAHL-STQNFPRLRIGIGKPKNAVNGDNSETVSHVLGKFSATETQLMSLVLQFVVECVELSLKQGVEKAMNRCNS 195          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ALKMQ (Peptidyl-tRNA hydrolase OS=Alkaliphilus metalliredigens (strain QYMF) GN=pth PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.101e-37
Identity = 79/185 (42.70%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++IVGLGNPGK+Y+GTRHNVGF+++D +A   GI+V+ +  KA +G+  IG   V+LAKPQTFMN SG+S+  ++ +YKI  + ++VI+DD+D+    +R+   G  G HNGM+S I   + +  FPR+RIG+GRP    D  N+VL  F+K E   +  + ++    V  ++++G +KA    N
Sbjct:    2 YIIVGLGNPGKKYSGTRHNVGFDVIDLLAHRLGITVNKLKHKALYGEARIGGEKVILAKPQTFMNLSGESIREMMQFYKIDPENLIVIYDDIDVKVGSLRIRQSGSAGTHNGMKSTIYQLQ-TDAFPRIRIGVGRPEFG-DLSNYVLGSFTKDEIPLMKESLERATLTVESIVIDGIDKAMNRYN 184          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ROSS1 (Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain RS-1) GN=pth PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.437e-37
Identity = 83/190 (43.68%), Postives = 114/190 (60.00%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            WLIVGLGNPG  Y  TRHN+GF +V  +A+   +  +     A   +G I    V LA PQT+MN SGQ+V  +  +YKI P  ++LV++DD+DLPF  +RL  +G  G HNGMRSII    GS+ FPRLRIGI RPP   D  ++VL  F+ ++  +L    Q+  +A+  ++ EG   A   +N   P
Sbjct:    2 WLIVGLGNPGDTYARTRHNIGFRVVSELAQRHRLEFTHKRAHARIAEGIIAGQRVALALPQTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIIT-LLGSQVFPRLRIGIDRPPPAWDLADYVLGRFTPEQEAQLPDIMQKAADALETVVREGMAVAMNRINAPPP 190          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOKA (Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilus GN=pth PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.877e-37
Identity = 80/185 (43.24%), Postives = 116/185 (62.70%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTF-------QQGVEAVRILLLEGFNK 681
            L VGLGNPGK+Y  TRHNVGF ++D +A+   +S+ +  F+  FG   +    V L KP T+MN SG+ V  ++ YY I +  V+VI+DDLDLP  K+RL  KG  GGHNG++S+I H  G+ +F R+RIGIGRP G     ++VL  F+++E+  +D          +Q V+A  I ++  FN+
Sbjct:    3 LFVGLGNPGKEYEQTRHNVGFFVIDELAKRWNVSLKTAKFRGLFGTASVSGEKVALCKPLTYMNLSGECVRPLMDYYDIAIDDVIVIYDDLDLPPGKIRLRLKGSSGGHNGVKSLIHHL-GTEQFKRIRIGIGRPAGGQPVTDYVLGRFTEEEKPAVDKAVLRAADACEQAVKAPFIQVMNDFNE 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOPH (Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.452e-37
Identity = 74/185 (40.00%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I+GLGNP ++Y  TRHN+GF+ +  +A+   IS+ +   KA  GKG IG   V+LAKPQT+MN SG+SV  ++ +YK+  ++++VI+DD+ L   ++R+  KG  GGHNG+++II H  GS EF R++IG+G  P   D  ++VL  F K+E   +    ++  +A   +L +G   A    N
Sbjct:    2 YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKPQTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL-GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVAMNLFN 185          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_BACC14.940e-3844.91Peptidyl-tRNA hydrolase OS=Bacillus cereus (strain... [more]
PTH_ARTCA6.452e-3842.63Peptidyl-tRNA hydrolase OS=Arthrobacter chlorophen... [more]
CRS2L_ORYSJ6.452e-3861.40CRS2-like protein, chloroplastic OS=Oryza sativa s... [more]
PTH_CLOBA1.101e-3740.43Peptidyl-tRNA hydrolase OS=Clostridium botulinum (... [more]
PTH_ANAVT1.101e-3745.88Peptidyl-tRNA hydrolase OS=Anabaena variabilis (st... [more]
PTH_ANASP1.101e-3745.88Peptidyl-tRNA hydrolase OS=Anabaena sp. (strain PC... [more]
PTH_ALKMQ1.101e-3742.70Peptidyl-tRNA hydrolase OS=Alkaliphilus metallired... [more]
PTH_ROSS11.437e-3743.68Peptidyl-tRNA hydrolase OS=Roseiflexus sp. (strain... [more]
PTH_GEOKA1.877e-3743.24Peptidyl-tRNA hydrolase OS=Geobacillus kaustophilu... [more]
PTH_CLOPH2.452e-3740.00Peptidyl-tRNA hydrolase OS=Clostridium phytofermen... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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