FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ROSCS (Peptidyl-tRNA hydrolase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pth PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.182e-37
Identity = 82/190 (43.16%), Postives = 117/190 (61.58%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKP 711
            WLIVGLGNPG+ Y  TRHN+GF +V  +A+   +  +    KA   +G I    V LA PQT+MN SGQ+V  +  +YKI P  ++LV++DD+DLPF  +RL  +G  G HNGMRSI+    GS+ FPRLRIGI RPP   +  ++VL  F+ ++  +L    ++  +A+ ++L EG   A   +N   P
Sbjct:    2 WLIVGLGNPGETYARTRHNIGFRVVTELAQRHHLRFTHKRAKAEIAEGEIAGQRVALALPQTYMNLSGQAVVGLRQWYKIDPATELLVVYDDVDLPFGVLRLRERGSAGTHNGMRSIV-ALLGSQVFPRLRIGIDRPPVAWNLADYVLARFTPEQEAQLPEVTRRAADALELVLREGIVVAMNRINAPPP 190          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GLOVI (Peptidyl-tRNA hydrolase OS=Gloeobacter violaceus GN=pth PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L VGLGNPG QY  TRHN GF  VDA+A+    S V    FK +  +G       +L KP T+MN SGQSV ++  Y+++P +Q+LV++D++ LP  K+RL P+G   GHNG++S+I+H  G+ +F RLRIGIGR P      N+VL  F+ +E+++L       VEAV  +L +G  KA +  N
Sbjct:    5 LFVGLGNPGLQYTQTRHNAGFLAVDALAKRWQCSWVEKSRFKGYLAEGAGPGGRAILLKPTTYMNHSGQSVRAVADYFRLPPQQLLVLYDEVALPLGKIRLRPEGSAAGHNGIKSLIEHL-GTNQFARLRIGIGREPPPPVLTNYVLGKFAPEEQEQLPAILDGCVEAVEAVLAKGLEKAMSIYN 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_EUBE2 (Peptidyl-tRNA hydrolase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=pth PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 78/185 (42.16%), Postives = 108/185 (58.38%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPGK+Y GTRHN GF ++D +A+   ISV +   K   GKG I    V+L KP T+MN SG+ +  ++ YYK  +   LVIFDD+ L   K+RL  KG  GGHNG++SII H  GS +F R++ G+G  P   D  ++VL  F  +E   L    ++  EAV  +L +G        N
Sbjct:    2 YIIAGLGNPGKEYMGTRHNAGFSVIDELADKYNISVDTAKHKGLIGKGVIAGQKVILVKPMTYMNNSGECIREVMDYYKCDIDDFLVIFDDISLDVGKLRLRAKGSAGGHNGIKSIIAHL-GSDKFKRIKFGVGDKPKNWDLADWVLGKFPAEEYATLREANKKACEAVECILTDGIESGMNKYN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOPS (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain SM101 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 73/158 (46.20%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621
            LIVGLGNPGKQY  TRHN+GF+++D +A    I V+   FK   G+GFI N  V+L KP T+MN SG+S+   V++YK+   +++V++DD+ L   ++R+  KG  GGHNG++SII +  G + FPR+++G+G+P  K + VN VL  FSK++R+ ++
Sbjct:    3 LIVGLGNPGKQYEKTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIREFVNFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIE 157          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BREBN (Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pth PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.462e-37
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRP-PGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +I+GLGNPGK+Y  TRHN GF  +D I++  GI V+   F+A  G+G I    V+L KPQT+MN SG+SV  ++ +YK+    ++VI+DDLDLP   +RL  KG  GGHNG++S+I H  G++EF R+++GI RP PG+  S ++VL  F   ER ++        +A  +   E F K     N+ K
Sbjct:    3 VIIGLGNPGKKYEDTRHNAGFMAIDKISDKWGIPVTQNKFRALVGEGRIEGEKVLLVKPQTYMNLSGESVAEVLKFYKLIPDDLVVIYDDLDLPTGHLRLREKGSAGGHNGIKSMIQHL-GTQEFKRIKVGISRPEPGRSVS-DYVLNTFPVAERADIQEAVSLAADACAMWTRESFLKVMNHFNSLK 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_TRIEI (Peptidyl-tRNA hydrolase OS=Trichodesmium erythraeum (strain IMS101) GN=pth PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 84/194 (43.30%), Postives = 123/194 (63.40%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVS-SVNFKAHFGKGFIGNVP-VMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPP------GKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P LIVGLGNP  +Y+ TRHN+GF  +D IA    +S+S +  FK  FG+G       + L KP T+MN SG+++ ++V++YK+P   VL+I+DD+DLP  ++RL   G  GGHNGM+S I H  G++EFPRLRIGIG+P       G+  +++ VL  FS +E + +    +  V+AV + L +G  KA +  N
Sbjct:   13 PKLIVGLGNPEPKYDQTRHNIGFTGIDTIANIWQVSLSENRKFKGEFGEGRRPKAEKIYLLKPLTYMNRSGEAISAVVNWYKLPPSCVLIIYDDMDLPMGRLRLRLSGSAGGHNGMKSAIAHL-GTQEFPRLRIGIGKPKNITAERGEAKTISHVLGKFSPKENKLMTQVLELVVDAVELSLKQGIEKAMSLYN 205          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SYNAS (Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophicus (strain SB) GN=pth PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 83/184 (45.11%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG +Y  TRHN GF ++D +AE + I +S   F A +GKG I    V+LAKPQTFMN SG+SV  +  ++KI ++ VLV+ DDLDLPF  +RL   GG GGH G+ SI D   G  EF R+R+GIG+P  +     +VL PF++ E + L         A+  ++  G   A    N
Sbjct:    3 LIVGLGNPGARYRFTRHNFGFFVLDQLAEDQDIMMSQTGFDALWGKGVIAGQSVLLAKPQTFMNLSGKSVRKLADFFKIVVEDVLVVHDDLDLPFGVIRLKAGGGQGGHKGLISICDSL-GGPEFQRVRLGIGKPAQRSAVERYVLEPFTESELRILPRIIVTARSAILEVISSGIKTAMNSYN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_PELCD (Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=pth PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 78/184 (42.39%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            L+VGLGNPG +Y  TRHN+GF +    A+  G+S+    ++   G G       M+  PQT+MN SG SV S      I ++ V+VI D++DLPF  +R+   GGHGGHNG+RSI+D   G R+F R+R+G+GRP G++D   +VL  FS  E+ +LD   +  V+A+ +LL +G  +A    N
Sbjct:    3 LVVGLGNPGPEYAATRHNIGFLVAQKFAQQMGVSLKRQAYQGIVGTGRADGQETMVLLPQTYMNRSGVSVVSACKSKGIAVEDVVVIHDEIDLPFGSIRIKVGGGHGGHNGLRSIVD-LLGCRDFLRVRMGVGRPQGQVDVAKYVLGQFSSTEKSQLDNVLENSVKALEVLLQKGAQQAMNEFN 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_NOCFA (Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=pth PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 80/187 (42.78%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGF------IGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            P L+VGLGNPG +Y  TRHNVGF + D +AE  G       F  H   G       +    V++AKP+++MN SG+ V ++  ++ +P  +V+V+ D+LDLPF  +RL   GG GGHNG+RSI      ++++ R RIGIGRPPG+ D  +FVL+PF+  ER+E+    +Q  +AV +LL  G   A
Sbjct:    8 PALVVGLGNPGSEYERTRHNVGFLVADVLAERVGD-----RFAVHKKSGADLLQARLDGRQVLIAKPRSYMNLSGRPVAALARFFSVPPTEVIVVHDELDLPFGAVRLKRGGGEGGHNGLRSISSALT-TKDYLRTRIGIGRPPGRQDPADFVLKPFAAAERKEVPVIVEQAADAVELLLRVGLEAA 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOTE (Peptidyl-tRNA hydrolase OS=Clostridium tetani GN=pth PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.133e-37
Identity = 80/185 (43.24%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            +L+VGLGNPGK+Y  TRHN+GFE VD I+    I +    FK  FG G I N  V+L KP T+MN SG+S+  I+ YY IP+  V+VI+DD+DL   ++R+  KG  GGHNG++SII +   S +F RLRIG+G+P  + D V+ VL  F+K++ + ++   +   E    ++ +G  +A    N
Sbjct:    2 FLLVGLGNPGKEYEKTRHNIGFEAVDKISYEYNIPIKRERFKGVFGDGRISNEKVILLKPTTYMNLSGESLREIIEYYNIPITNVIVIYDDVDLEVGRLRIRTKGSAGGHNGIKSIIYNL-NSEDFIRLRIGVGKP--QRDMVSHVLGKFAKEDEKNIEEVLKIIPELAYTIINQGPQEAMNKYN 183          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_ROSCS4.182e-3743.16Peptidyl-tRNA hydrolase OS=Roseiflexus castenholzi... [more]
PTH_GLOVI5.462e-3744.32Peptidyl-tRNA hydrolase OS=Gloeobacter violaceus G... [more]
PTH_EUBE25.462e-3742.16Peptidyl-tRNA hydrolase OS=Eubacterium eligens (st... [more]
PTH_CLOPS5.462e-3746.20Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_BREBN5.462e-3743.09Peptidyl-tRNA hydrolase OS=Brevibacillus brevis (s... [more]
PTH_TRIEI7.133e-3743.30Peptidyl-tRNA hydrolase OS=Trichodesmium erythraeu... [more]
PTH_SYNAS7.133e-3745.11Peptidyl-tRNA hydrolase OS=Syntrophus aciditrophic... [more]
PTH_PELCD7.133e-3742.39Peptidyl-tRNA hydrolase OS=Pelobacter carbinolicus... [more]
PTH_NOCFA7.133e-3742.78Peptidyl-tRNA hydrolase OS=Nocardia farcinica GN=p... [more]
PTH_CLOTE7.133e-3743.24Peptidyl-tRNA hydrolase OS=Clostridium tetani GN=p... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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