FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_SYNY3 (Peptidyl-tRNA hydrolase OS=Synechocystis sp. (strain PCC 6803) GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 80/187 (42.78%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGIS-VSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P LIVGLGNP  +Y+ TRHN+GF +VDA+A     S      F+  FG+G +      L KP+T+MN SGQ+V ++V +YK+  + VLV++DD+DLP  ++RL   G  GGHNGM+S+I H  G+++FPRLR+GIG+  G  D++  VL  FS  E   ++ +     EA+   L  G  K  +  N
Sbjct:    3 PKLIVGLGNPEPKYDQTRHNIGFAVVDALAITWQCSWYDHKRFQGWFGEGLMAGQKTCLLKPRTYMNRSGQAVRAVVDWYKLDPQSVLVVYDDMDLPLGRLRLRQTGSAGGHNGMKSLISHL-GTQDFPRLRLGIGKSDGSKDTIAHVLGKFSPSELPIVEKSLDLATEAIAHSLHHGIAKTMSLFN 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRCO (Peptidyl-tRNA hydrolase OS=Streptomyces coelicolor GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 84/199 (42.21%), Postives = 118/199 (59.30%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGK-------GFIG-----NVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            PWL+ GLGNPG +Y   RHNVGF + D +AE  G       FK H GK       G IG     N  V+LAKP +FMN SG  V ++  +YK+P+  ++ + D+LD+ +  +RL   GG  GHNG++SI        ++ R+R GIGRPPG+M   +FVLR FS  ER+ELD+   +  +AV  L++EG  +A +  N+
Sbjct:   10 PWLVAGLGNPGPEYASNRHNVGFMVADLLAERIG-----ARFKRH-GKAQAQVVEGRIGPPGPANRRVILAKPMSFMNVSGGPVTALRDFYKVPVGNIVAVHDELDIDYGVLRLKLGGGDNGHNGLKSITKSL--GADYHRVRFGIGRPPGRMPVADFVLRDFSSTERKELDYFVDRAADAVEALVIEGLERAQSAYNS 200          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOSL (Peptidyl-tRNA hydrolase OS=Geobacter sulfurreducens GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 81/184 (44.02%), Postives = 114/184 (61.96%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LIVGLGNPG +Y  TRHN GF ++D +A A G SV+  +F   FG+G      ++L KPQT+MN SG+SV   + ++K+PL   +VI DDLD+PF ++++   GGHGGHNG+RS++    G   F R+R+GIGRP    D VN+VL  FS+ E  +L       ++ +  LL  G  K  +  N
Sbjct:    5 LIVGLGNPGPKYLWTRHNAGFMVLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQTYMNLSGRSVAEALRFHKLPLCDTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL-GGAGFVRVRVGIGRPV-HGDVVNYVLTNFSQDEMADLAHLLDGTLDLLESLLTAGLPKTMSLYN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ENTFA (Peptidyl-tRNA hydrolase OS=Enterococcus faecalis GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 80/185 (43.24%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            +IVGLGNPG +Y  T+HN+GF  +D IA  + +S ++ NF+A   + FIG   V+L KP TFMN SG+SVG +++Y+ +  + ++VI+DDLDL   K+RL  KG  GGHNG++S+I H  G+  FPR++IGIGRP      ++ VL  F K+  +E+    ++  +A  +   EG     TFV T
Sbjct:    3 VIVGLGNPGSKYKETKHNIGFITLDEIAYRQNVSFNNSNFEADIAEFFIGTEKVLLVKPLTFMNESGRSVGPLLTYFGVDEEDLIVIYDDLDLEIGKIRLRQKGSAGGHNGIKSLIAHL-GTNVFPRIKIGIGRPSKNDTVIHHVLSTFPKETHEEMLLAVKKAADAA-LYACEGH----TFVET 181          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOPE (Peptidyl-tRNA hydrolase OS=Clostridium perfringens GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 72/158 (45.57%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621
            LIVGLGNPGKQY  TRHN+GF+++D +A    I V+   FK   G+GFI N  V+L KP T+MN SG+S+  + ++YK+   +++V++DD+ L   ++R+  KG  GGHNG++SII +  G + FPR+++G+G+P  K + VN VL  FSK++R+ ++
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIE 157          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOP1 (Peptidyl-tRNA hydrolase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pth PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.316e-37
Identity = 72/158 (45.57%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELD 621
            LIVGLGNPGKQY  TRHN+GF+++D +A    I V+   FK   G+GFI N  V+L KP T+MN SG+S+  + ++YK+   +++V++DD+ L   ++R+  KG  GGHNG++SII +  G + FPR+++G+G+P  K + VN VL  FSK++R+ ++
Sbjct:    3 LIVGLGNPGKQYEQTRHNIGFDVIDYMANKYNIDVNREKFKGICGEGFIENKKVILLKPLTYMNLSGESIRELANFYKLEDDEIIVVYDDISLDIGRLRIREKGSAGGHNGIKSIIQNLGGDK-FPRVKVGVGQP--KDNLVNHVLGKFSKEDREHIE 157          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RHOOB (Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (strain B4) GN=pth PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.217e-36
Identity = 78/180 (43.33%), Postives = 113/180 (62.78%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK-AHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            L+VGLGNPG QY  TRHNVGF +   ++   G   S+     A   +G +   P +LAKP++FMN SG +V  +  ++ +    ++VI D+LDL F  +RL   GG GGHNG+RSI     G++++ R R+GIGRPPG+MD  ++VL+PFS  ER+ELD   ++  +AV ++L  G   A
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMGGKFSAHKKSGAEIVQGRLEGRPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISQSL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRLGLEAA 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_GEOSF (Peptidyl-tRNA hydrolase OS=Geobacter sp. (strain FRC-32) GN=pth PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.217e-36
Identity = 79/184 (42.93%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            +IVGLGNPG +Y  TRHN GF ++D ++   GI++S   F    G+G      ++L KPQTFMN SG+S    + ++K+P++ ++VI DDLD+PF +++L   GGH GHNG+RS+     GS +F R+R+GIGRP    D VN+VL  FS +E   L       V+ V +L  EG  K  +  N
Sbjct:    5 IIVGLGNPGPKYQWTRHNAGFMVLDRLSHLAGIAISKKTFSGVCGEGNWQGERLILLKPQTFMNLSGRSAAEAIRFHKLPIEDLIVIHDDLDIPFGRVKLKQGGGHAGHNGLRSLAQEL-GSGDFVRVRVGIGRPV-HGDVVNYVLNNFSPEEMASLPRLLDGVVDLVEMLAREGLPKTMSLYN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCS2 (Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis GN=pth PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.589e-36
Identity = 80/188 (42.55%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK--AHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHN+GF + D +A   G S   V+ K  A    G +    V+LAKP+ +MN SG+ VG +  +Y +P +Q++VI D+LD+ F ++RL   GG GGHNG+RS+     G++ F R+RIG+GRPPG+ D   FVL  F+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLEPAQNTVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACA2 (Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaciens (strain FZB42) GN=pth PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.589e-36
Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            +I GLGNPGK Y  TRHNVGF  +D +++   I ++   F   +G GF+    V+L KP T+MN SG+ +  I+ YY    + + VI+DDLDLP  K+RL  KG  GGHNG++S+I H  G+ EF R+RIGIGRP   M  V++VL  F+K+E   ++    + V+A    L + F
Sbjct:    3 VIAGLGNPGKTYENTRHNVGFMAIDELSKEWNIELNKTKFNGLYGMGFVSGKKVLLVKPLTYMNLSGECLRPILDYYDADHEDLKVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTPEFDRVRIGIGRPVNGMKVVDYVLGAFTKEEAPHINDAVSKTVKACEASLTKPF 177          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_SYNY39.316e-3742.78Peptidyl-tRNA hydrolase OS=Synechocystis sp. (stra... [more]
PTH_STRCO9.316e-3742.21Peptidyl-tRNA hydrolase OS=Streptomyces coelicolor... [more]
PTH_GEOSL9.316e-3744.02Peptidyl-tRNA hydrolase OS=Geobacter sulfurreducen... [more]
PTH_ENTFA9.316e-3743.24Peptidyl-tRNA hydrolase OS=Enterococcus faecalis G... [more]
PTH_CLOPE9.316e-3745.57Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_CLOP19.316e-3745.57Peptidyl-tRNA hydrolase OS=Clostridium perfringens... [more]
PTH_RHOOB1.217e-3643.33Peptidyl-tRNA hydrolase OS=Rhodococcus opacus (str... [more]
PTH_GEOSF1.217e-3642.93Peptidyl-tRNA hydrolase OS=Geobacter sp. (strain F... [more]
PTH_MYCS21.589e-3642.55Peptidyl-tRNA hydrolase OS=Mycobacterium smegmatis... [more]
PTH_BACA21.589e-3643.75Peptidyl-tRNA hydrolase OS=Bacillus amyloliquefaci... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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