FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRSY (Peptidyl-tRNA hydrolase OS=Streptococcus suis (strain 05ZYH33) GN=pth PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 78/175 (44.57%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            LI+GLGNPG +Y  T+HNVGF ++D IA+ E ++ +    F+A     FI    + L KP TFMN SG++V ++++YY +    +LV +DDLD+   K+R   KG  GGHNG++SI+ H  G++EF R++IGIGRP GKM  VN VL  F  ++R E+D    +  +AV + L E
Sbjct:    4 LIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIFQADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDATDILVAYDDLDMAVGKIRFRQKGSAGGHNGIKSIVKHI-GTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEIDLALDKLDKAVNVYLEE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRS2 (Peptidyl-tRNA hydrolase OS=Streptococcus suis (strain 98HAH33) GN=pth PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 78/175 (44.57%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVN-FKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLE 669
            LI+GLGNPG +Y  T+HNVGF ++D IA+ E ++ +    F+A     FI    + L KP TFMN SG++V ++++YY +    +LV +DDLD+   K+R   KG  GGHNG++SI+ H  G++EF R++IGIGRP GKM  VN VL  F  ++R E+D    +  +AV + L E
Sbjct:    4 LIIGLGNPGDRYFETKHNVGFMLLDKIAKRENVTFNHDKIFQADIATTFIDGEKIYLVKPTTFMNESGKAVHALMTYYGLDATDILVAYDDLDMAVGKIRFRQKGSAGGHNGIKSIVKHI-GTQEFDRIKIGIGRPKGKMSVVNHVLSGFDIEDRIEIDLALDKLDKAVNVYLEE 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_RHOSR (Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain RHA1) GN=pth PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 78/180 (43.33%), Postives = 112/180 (62.22%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFK-AHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKA 684
            L+VGLGNPG QY  TRHNVGF +   ++   G   S+     A   +G     P +LAKP++FMN SG +V  +  ++ +    ++VI D+LDL F  +RL   GG GGHNG+RSI     G++++ R R+GIGRPPG+MD  ++VL+PFS  ER+ELD   ++  +AV ++L  G   A
Sbjct:    7 LVVGLGNPGPQYEKTRHNVGFMVAGVLSARMGGKFSAHKKSGAEIVQGRFEGRPTILAKPRSFMNLSGSAVAGLARFFSVDPGNIVVIHDELDLDFGTIRLKQGGGEGGHNGLRSISSAL-GTKDYLRTRVGIGRPPGRMDPASYVLKPFSSVERKELDLVCEESADAVELVLRVGLEAA 185          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACHD (Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=pth PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.075e-36
Identity = 77/176 (43.75%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            LIVGLGNPG +Y+GTRHNVGF++VDA+A    I +        +G+G I    + L KPQTFMN SG+SV   + YY + ++ +LVI+DDLDLP  K+RL  KG  GGHNGM+S+I H  G+ +F R+R+G+ RP      V  VL  +  +E+  +        EA      + F
Sbjct:    3 LIVGLGNPGAKYDGTRHNVGFDVVDAVARRLNIEIKQSKANGLYGEGRIDGEKIFLLKPQTFMNRSGESVRPFLEYYNMEVEDLLVIYDDLDLPVGKIRLRQKGSAGGHNGMKSLIAHL-GTSDFKRIRVGVDRPAPGETVVQHVLGRYRPEEKDAISEAIDLSAEAAEAFTKKPF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_OCEIH (Peptidyl-tRNA hydrolase OS=Oceanobacillus iheyensis GN=pth PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 70/168 (41.67%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            LIVGLGNPG+++  TRHN+GF ++D + +     +++  F+  +         V+L +PQT+MN SG+S+  ++ Y+ I +  V+V++DDLDLP  K+RL  KGGHGGHNG+RS IDH  G+++F R+R+GIGRP      +++VL  F KQE   +  + ++  +A+
Sbjct:    3 LIVGLGNPGRKFKKTRHNIGFFVIDELLQRHKWKLNNSKFEGDYSIEHFDGEKVILLQPQTYMNLSGKSISPLMDYFDIDVDDVIVVYDDLDLPTGKIRLRQKGGHGGHNGVRSTIDHL-GTKDFKRVRLGIGRPTNATPVIDYVLGKFPKQETTAVTDSVEKAADAI 169          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CLOB8 (Peptidyl-tRNA hydrolase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pth PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 78/188 (41.49%), Postives = 114/188 (60.64%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAK 708
            +LIVGLGNPG +Y  TRHN+GF+++D IA+   I ++   FK  +G+GFI    VML KP T+MN SG+SV  +V +Y +   ++LVI+DD+ L   K+R+  KG  GGHNG++SII H   S  F R+++G+G+P G  D V  VL  F+K+E   L  + +   +A   ++      A    N  K
Sbjct:    2 FLIVGLGNPGNEYENTRHNIGFKVIDNIAKEYNIEINRQKFKGMYGEGFINGKKVMLLKPTTYMNLSGESVREVVDFYNLNNDEILVIYDDISLEVGKLRIREKGSAGGHNGIKSIIAHL-NSEIFSRIKVGVGQPNG--DLVKHVLGKFTKEETAILSESIEASTKAAAEIIKNDVKTAMNQFNGFK 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_BACLD (Peptidyl-tRNA hydrolase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=pth PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 75/176 (42.61%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGF 675
            +  GLGNPGK Y  TRHNVGF  +D +++   I +    F   +G GF+    V+L KP T+MN SG+ +  ++ YY+IP+  + VI+DDLDLP  ++RL  KG  GGHNG++S I H  G+ EF R+RIGIGRP   M  V++VL  F+ +E   +    +Q  +A    L + F
Sbjct:    3 VFAGLGNPGKTYENTRHNVGFMTIDELSKEWNIPLDKTKFNGQYGIGFVSGKKVLLVKPLTYMNLSGECLRPLLDYYEIPVDNLKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSTIQHL-GTSEFNRIRIGIGRPVNGMKVVDYVLGAFTDEEEPAIKEAVRQSAKACEASLEKPF 177          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_AQUAE (Peptidyl-tRNA hydrolase OS=Aquifex aeolicus GN=pth PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.711e-36
Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAV 651
            L+VGLGNPGK+Y  TRHNVGF ++D + +A           +H  K  IG   V+LAKP T+MN SG +V +++  YK+  +Q++V++DDLDLP   MRL  KG  GGH G+ SII +  G++ FPRLRIGIGRP  K D V +VL PFS +E + +    ++ V  +
Sbjct:    5 LVVGLGNPGKEYEKTRHNVGFMVIDELVKALRAKGPFEEALSHVYKARIGGKEVILAKPMTYMNNSGAAVYNLLEEYKLSPEQMIVVYDDLDLPLGHMRLRLKGSSGGHRGVESIIKYI-GTQNFPRLRIGIGRPKKKEDVVKYVLSPFSPEEEKVISQVIKKAVRCL 171          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_STRA1 (Peptidyl-tRNA hydrolase OS=Streptococcus agalactiae serotype Ia GN=pth PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 75/173 (43.35%), Postives = 110/173 (63.58%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSS-VNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILL 663
            +IVGLGNPG +YN T+HN+GF  +D I +   ++ +   NFKA  G  FI    +   KP TFMN SG +V ++++YY I +K +++I+DDLD+   K+R   KG  GGHNG++SII H  G++EF R+++GIGRP G+M  +N VL  F K +   +  T  +   AV+  L
Sbjct:    4 MIVGLGNPGSKYNDTKHNIGFMAIDRIVKNLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHL-GTQEFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMISNTLDKVDNAVKYYL 175          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCPA (Peptidyl-tRNA hydrolase OS=Mycobacterium paratuberculosis GN=pth PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 82/192 (42.71%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHNVGF + D +A   G       FKAH         G +    V++AKP+ +MN SG+ VG +  +Y +P   ++VI DDLDL F ++RL   GG GGHNG+RS+ +   GS++F R+RIGIGRPPG+ D   FVL  F+  ER ++    +Q  +A  +L+  G   A   V+
Sbjct:    4 PLLVVGLGNPGDNYARTRHNVGFMVADLLAARMGSK-----FKAHKRSGAEIVSGRLAGRSVVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRSVANAL-GSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGLEPAQNRVH 189          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_STRSY2.075e-3644.57Peptidyl-tRNA hydrolase OS=Streptococcus suis (str... [more]
PTH_STRS22.075e-3644.57Peptidyl-tRNA hydrolase OS=Streptococcus suis (str... [more]
PTH_RHOSR2.075e-3643.33Peptidyl-tRNA hydrolase OS=Rhodococcus sp. (strain... [more]
PTH_BACHD2.075e-3643.75Peptidyl-tRNA hydrolase OS=Bacillus halodurans GN=... [more]
PTH_OCEIH2.711e-3641.67Peptidyl-tRNA hydrolase OS=Oceanobacillus iheyensi... [more]
PTH_CLOB82.711e-3641.49Peptidyl-tRNA hydrolase OS=Clostridium beijerincki... [more]
PTH_BACLD2.711e-3642.61Peptidyl-tRNA hydrolase OS=Bacillus licheniformis ... [more]
PTH_AQUAE2.711e-3646.43Peptidyl-tRNA hydrolase OS=Aquifex aeolicus GN=pth... [more]
PTH_STRA13.540e-3643.35Peptidyl-tRNA hydrolase OS=Streptococcus agalactia... [more]
PTH_MYCPA3.540e-3642.71Peptidyl-tRNA hydrolase OS=Mycobacterium paratuber... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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