FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DICNV (Peptidyl-tRNA hydrolase OS=Dichelobacter nodosus (strain VCS1703A) GN=pth PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.540e-36
Identity = 81/186 (43.55%), Postives = 117/186 (62.90%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISV-SSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNT 702
            LIVGLGNPG+QY  TRHN GF ++D  A+     + +   F A FG+  I    + L KPQTFMNASG+S+ ++  +Y I  +Q+L+I D+LDLP  K++L   GGHGGHNG+R II     S++F RLRIGIGRP      +++VL+  S    + L+ +   G +A+  L+ EG  KA  ++++
Sbjct:    4 LIVGLGNPGEQYQKTRHNAGFWLLDQTAQDYSCRLRTEKKFFAEFGEIAINQQKIFLLKPQTFMNASGKSLAAVCRFYHIEPQQILIIHDELDLPEGKIKLKKSGGHGGHNGLRDIIAAL-ASQDFYRLRIGIGRPENSTQVIDYVLKAPSATHMERLNESLSYGKKAIEKLITEGDEKAMHWLHS 188          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCSS (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain MCS) GN=pth PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 78/192 (40.62%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHNVGF + D +A   G       FKAH         G +    V+LAKP+T+MN SG++VG +  +Y +    V+VI D+LD+ F ++RL   GG  GHNG++S+     G+++F R+R+G+GRPPG+ D+  +VL PF+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSG-----FKAHRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCSK (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain KMS) GN=pth PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 78/192 (40.62%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHNVGF + D +A   G       FKAH         G +    V+LAKP+T+MN SG++VG +  +Y +    V+VI D+LD+ F ++RL   GG  GHNG++S+     G+++F R+R+G+GRPPG+ D+  +VL PF+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSG-----FKAHRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCSJ (Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (strain JLS) GN=pth PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 78/192 (40.62%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHNVGF + D +A   G       FKAH         G +    V+LAKP+T+MN SG++VG +  +Y +    V+VI D+LD+ F ++RL   GG  GHNG++S+     G+++F R+R+G+GRPPG+ D+  +VL PF+  ER E+    +Q  +A  +L+ +G   A   V+
Sbjct:    4 PLLVVGLGNPGPNYAKTRHNVGFVVADLLAGRIGSG-----FKAHRKSGADIATGRLAGRAVVLAKPRTYMNESGRNVGPLAKFYSVAPADVIVIHDELDIDFGRIRLKFGGGVAGHNGLKSVAAAL-GTKDFQRVRVGVGRPPGRKDAATYVLEPFTSVERPEVPTICEQAADATELLIAQGLEPAQNLVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MYCA1 (Peptidyl-tRNA hydrolase OS=Mycobacterium avium (strain 104) GN=pth PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.624e-36
Identity = 82/192 (42.71%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAH------FGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            P L+VGLGNPG  Y  TRHNVGF + D +A   G       FKAH         G +    V++AKP+ +MN SG+ VG +  +Y +P   ++VI DDLDL F ++RL   GG GGHNG+RS + +  GS++F R+RIGIGRPPG+ D   FVL  F+  ER ++    +Q  +A  +L+  G   A   V+
Sbjct:    4 PLLVVGLGNPGDNYARTRHNVGFMVADLLAARMGSK-----FKAHKRSGAEIVSGRLAGRSVVVAKPRCYMNESGRQVGPLAKFYSVPPGDIIVIHDDLDLDFGRIRLKIGGGEGGHNGLRS-VSNALGSKDFQRVRIGIGRPPGRKDPAAFVLENFTSTERADVPTICEQAADATELLIELGLEPAQNRVH 189          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_ARTS2 (Peptidyl-tRNA hydrolase OS=Arthrobacter sp. (strain FB24) GN=pth PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 76/189 (40.21%), Postives = 118/189 (62.43%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHF--GKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTA 705
            WLIVGLGNPG +Y+  RHNVG  ++D +A   G S      +AH   G+  IG   V+LAKP ++MN SG  V ++  +Y I  + V+ + D++D+PF+ ++L   GG GGHNG+R  I     ++++ R+R+G+GRPPG+MD+ +FVL+ F+  E+++L F      +AV  ++ EG   A    +TA
Sbjct:    5 WLIVGLGNPGTEYSNNRHNVGQMVLDELARRVGGSFKVHKARAHVLEGRLGIGGPRVVLAKPMSYMNVSGGPVSALSKFYDIDPEHVVAVHDEIDIPFNTVKLKIGGGEGGHNGLRD-ISKALATKDYLRVRVGVGRPPGRMDTADFVLKDFATTEKKDLPFLLDDAADAVETVVREGLAAAQQKYHTA 192          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_AGRRK (Peptidyl-tRNA hydrolase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=pth PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.039e-36
Identity = 80/161 (49.69%), Postives = 103/161 (63.98%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTF 630
            LIVGLGNPG +Y G RHN+GF  VDAI      S  +  F+A   +G +G   V+L KPQTFMN SG+SVG  + +YK+    ++VI+D+LDLP +K RL   GGHGGHNG++SI  H    RE+ RLR+GIG P  K    N VL  F+K +R  L+  F
Sbjct:    3 LIVGLGNPGAKYQGNRHNIGFMAVDAIHRRHSFSPWAKKFRAEISEGELGGQKVLLIKPQTFMNLSGESVGEAMRFYKLEPSDLVVIYDELDLPAAKARLKTGGGHGGHNGIKSIDAHC--GREYRRLRLGIGHPGVKELVQNHVLGDFAKVDRDWLEPLF 161          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_MACCJ (Peptidyl-tRNA hydrolase OS=Macrococcus caseolyticus (strain JCSC5402) GN=pth PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 72/171 (42.11%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  151 IVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILL 663
            IVGLGN GK+Y  TRHN+GF +VD + E+  + ++   FK  +    I    V+L +P T+MN+SG++V  ++ Y+ +  + +LV++DDLD+P  ++RL  KG  GGHNG+RS+I H  G+ +F R+RIGIGRP G +  V+FVL+ F+  E   +D    Q ++AV   +
Sbjct:    4 IVGLGNIGKKYELTRHNIGFMVVDRLVESYNLELNQQKFKGLYAIAMINGEKVLLIEPMTYMNSSGEAVRPLMDYFNVSTEDLLVLYDDLDMPPGRLRLRQKGSAGGHNGIRSLIQHL-GTDQFKRIRIGIGRPTGHLKVVDFVLQKFTPDEMIVMDKVINQTIKAVEAFI 173          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DESHY (Peptidyl-tRNA hydrolase OS=Desulfitobacterium hafniense (strain Y51) GN=pth PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 78/184 (42.39%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LI GLGNPG QY  TRHN GF ++D +AE   +      F+    +  +G   V L KPQTFMN SG+S+  +  +YKI  K ++V++DD+DLP  ++RL   G  GGHNG++S I    G+ +F RL++GIGRP    DS  +VL  F+K+E   L+    +G++AV +   EG +KA    N
Sbjct:    3 LIAGLGNPGGQYAETRHNAGFLLLDCLAEELKLDFRP-KFQGLVAETMMGGEKVYLLKPQTFMNLSGRSIRELAQFYKIAPKDIMVVYDDMDLPIGRLRLRSSGSAGGHNGIKSTIAEL-GTEDFWRLKVGIGRPTAGWDSARYVLASFTKEELPVLEEILDKGIKAVTLWAKEGGDKAMNLYN 184          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_DESHD (Peptidyl-tRNA hydrolase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pth PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 78/184 (42.39%), Postives = 111/184 (60.33%), Query Frame = 1
Query:  148 LIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            LI GLGNPG QY  TRHN GF ++D +AE   +      F+    +  +G   V L KPQTFMN SG+S+  +  +YKI  K ++V++DD+DLP  ++RL   G  GGHNG++S I    G+ +F RL++GIGRP    DS  +VL  F+K+E   L+    +G++AV +   EG +KA    N
Sbjct:    3 LIAGLGNPGGQYAETRHNAGFLLLDCLAEELKLDFRP-KFQGLVAETMMGGEKVYLLKPQTFMNLSGRSIRELAQFYKIAPKDIMVVYDDMDLPIGRLRLRSSGSAGGHNGIKSTIAEL-GTEDFWRLKVGIGRPTAGWDSARYVLASFTKEELPVLEEILDKGIKAVTLWAKEGGDKAMNLYN 184          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_DICNV3.540e-3643.55Peptidyl-tRNA hydrolase OS=Dichelobacter nodosus (... [more]
PTH_MYCSS4.624e-3640.63Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSK4.624e-3640.63Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCSJ4.624e-3640.63Peptidyl-tRNA hydrolase OS=Mycobacterium sp. (stra... [more]
PTH_MYCA14.624e-3642.71Peptidyl-tRNA hydrolase OS=Mycobacterium avium (st... [more]
PTH_ARTS26.039e-3640.21Peptidyl-tRNA hydrolase OS=Arthrobacter sp. (strai... [more]
PTH_AGRRK6.039e-3649.69Peptidyl-tRNA hydrolase OS=Agrobacterium radiobact... [more]
PTH_MACCJ7.887e-3642.11Peptidyl-tRNA hydrolase OS=Macrococcus caseolyticu... [more]
PTH_DESHY7.887e-3642.39Peptidyl-tRNA hydrolase OS=Desulfitobacterium hafn... [more]
PTH_DESHD7.887e-3642.39Peptidyl-tRNA hydrolase OS=Desulfitobacterium hafn... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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