FC873515

Overview
NameFC873515
Unique NameFC873515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: FBPC_PSEPF (Fe(3+) ions import ATP-binding protein fbpC OS=Pseudomonas fluorescens (strain Pf0-1) GN=fbpC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 65/243 (26.75%), Postives = 106/243 (43.62%), Query Frame = 3
Query:   21 MNENEKLNSVKVCGMQFSYEGNDKPPLFYDFNLGISPGSRCLLVGANGSGKTTLLKILAGKH-------MVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFS-----AEHMIFGVEGSDPVRRERLIELLD-----IDLQWRM-HKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 695
            MN  + +N  K  G Q + +           NL +  GSR ++VG +GSGKTTLL+++AG         M+ G+ +V   +    +  Q+                    G +P  G        A+++ FG+  +   R ER+  L+D      D+  R  H++S GQ++RV +   L    +++LLDE    LD   R  +        E+ G T +  TH      ++A  LA ++DG L
Sbjct:    1 MNALDIINLSKSFGAQTALDS---------INLSVPTGSRTVIVGPSGSGKTTLLRMIAGFEFPDAGSLMLNGQTLVDRTHAVPAYQRQI--------------------GYVPQDGALFPHMTVADNIGFGLAETGSARAERIQALMDNVALNADMATRWPHELSGGQQQRVSLARALAQRPRLMLLDEPFSALDTGLRGAMRKMVARLLEEAGVTTILVTHDQGEALSFADQLAVMRDGRL 214          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: CBIO1_STRP3 (Cobalt import ATP-binding protein cbiO 1 OS=Streptococcus pyogenes serotype M3 GN=cbiO1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 57/205 (27.80%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  105 YDFNLGISPGSRCLLVGANGSGKTTLLKILAGKHM----VGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIPLQGDFSAEHMIFGV--EGSDPVRRERL--IELLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGEL 695
            ++ NL I  GS    +G  GSGK+T++++L G H+    +   D   + N S   + + +      ++G  +        E  +  D +     FG+  E ++ + RE+L  + + +   +    ++S GQ RRV I   L    KVL+LDE T  LD   R +L+  FK +  Q G TIV  TH+ D +  +A  +  +  G++
Sbjct:   24 FNINLDILDGSYTAFIGHTGSGKSTIMQLLNGLHVPTTGIVSVDKQDITNHSKNKEIKSI----RKHVGLVFQFPESQLFEETVLKDVAFGPQNFGISPEEAEALAREKLALVGISENLFEKNPFELSGGQMRRVAIAGILAMQPKVLVLDEPTAGLDPKGRKELMTIFK-KLHQSGMTIVLVTHLMDDVANYADFVYVLDKGKI 223          
BLAST of FC873515 vs. ExPASy Swiss-Prot
Match: YHCH_BACSU (Uncharacterized ABC transporter ATP-binding protein yhcH OS=Bacillus subtilis GN=yhcH PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.551e-11
Identity = 54/224 (24.11%), Postives = 99/224 (44.20%), Query Frame = 3
Query:  108 DFNLGISPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVQVLNRSSFHDTQLVCSGDLSYLGGSWSKTVGSAGEIP-----LQGDFSAEHMIFGVEGSDPVRRERLIELLDID--LQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEITVDLDVVARMDLLDFFKDECEQRGATIVYATHIFDGLETWATHLAYIQDGELRRAEKLAELDELRNSTNLLSV 758
            D +  I  G     +G NG+GKTT ++++ G   +   DV             L+C   ++       K +G+  E P     L G  + +     V+G    + + ++EL+ +   +  ++   S G R+R+ +   LLH  KVL+LDE T  LD     ++ D  K    +RG  ++ ++H+   +E     +A +Q G+L   + + + +   N T    V
Sbjct:   22 DLSFTIREGEVFGFLGPNGAGKTTTIRMMVGLMKLSKGDV-------------LICGQSITKEYAKAIKHIGAIVENPELYKFLSGYKNLQQFARMVKGVTKEKIDEVVELVGLTDRIHDKVKTYSLGMRQRLGLAQCLLHDPKVLILDEPTNGLDPAGIREIRDHLKKLTRERGMAVIVSSHLLSEMELMCDRIAILQKGKLIDIQNVKDENIDENDTYFFQV 232          
The following BLAST results are available for this feature:
BLAST of FC873515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FBPC_PSEPF6.547e-1126.75Fe(3+) ions import ATP-binding protein fbpC OS=Pse... [more]
CBIO1_STRP36.547e-1127.80Cobalt import ATP-binding protein cbiO 1 OS=Strept... [more]
YHCH_BACSU8.551e-1124.11Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1CG04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1CG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873515 ID=FC873515; Name=FC873515; organism=Citrus clementina; type=EST; length=828bp
GAAGGAAAATGGCGGACGGAATGAATGAGAATGAGAAATTGAACAGTGTC
AAAGTATGCGGCATGCAATTTTCTTACGAGGGGAACGATAAGCCTCCTCT
ATTCTACGATTTCAACCTCGGTATCTCGCCGGGATCTCGTTGCCTTCTCG
TTGGCGCCAATGGATCTGGAAAAACGACGCTGTTAAAGATTTTGGCGGGA
AAGCATATGGTGGGAGGAAGAGACGTCGTGCAAGTGCTGAACCGATCGTC
GTTTCATGACACTCAACTTGTTTGTAGTGGTGACCTATCTTATCTTGGAG
GATCTTGGAGTAAAACTGTTGGCTCTGCTGGGGAGATTCCACTCCAGGGA
GACTTCTCTGCTGAGCATATGATATTTGGAGTTGAAGGCTCTGATCCTGT
AAGAAGAGAGAGGTTGATTGAGCTACTTGATATTGACCTGCAGTGGCGAA
TGCATAAGGTATCTGATGGACAGCGGCGTCGAGTCCAAATCTGTATGGGT
CTTCTTCATCCTTTTAAGGTGCTTTTGCTGGATGAGATTACAGTGGATCT
AGACGTTGTTGCCAGGATGGATTTACTTGATTTTTTCAAGGATGAATGTG
AGCAGAGAGGAGCTACAATTGTATATGCAACCCATATTTTTGACGGATTG
GAAACATGGGCTACACATCTGGCATACATCCAAGATGGTGAGTTGAGGAG
GGCTGAGAAGTTAGCAGAACTTGATGAGTTGAGGAACTCTACTAACCTAC
TTTCTGTTGTTGAGTCCTGCCTCCGTTCTGAAACCAAGCTTGAGAAGAAA
AGGCCCGTCGATCCTCCTAAACAAGTGC
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