FC873632

Overview
NameFC873632
Unique NameFC873632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10170 contig Ccv1_Contig10170:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 57/176 (32.39%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  198 FSTSRLIDAFVLILSIFLTLSLVQCTTDSSDVQ--ALQVLYTSLNS-PSVLTNWKGNEGDPCGESWKGVACEG-SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 707
            FS  ++  AF L+    L      C+  S D Q  AL  L  SL + P+ L++W  N+ +PC  +W  V C+  + V S+ +S +  SGT+   +  L +L+   L GN I   IP       +LTSL+L  N  +G +P +I ++  L +L +SRN L  +I +    L  L  L
Sbjct:    4 FSLQKMAMAFTLLFFACL------CSFVSPDAQGDALFALRISLRALPNQLSDWNQNQVNPC--TWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNL 171          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y4361_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 67/233 (28.76%), Postives = 93/233 (39.91%), Query Frame = 3
Query:  216 IDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSP-SVLTNWK-GNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPY--------------------QLPP---NLTS-------------------------LNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIFLEIFRIHLFHCS 764
            I  F + L I+  L +       +++ AL     +L+ P   LT+W       PC   W+GV C    V  I +  L LSG +   +S L  LRK  L  NS + TIP                     +LPP   NLTS                         L+++SN FSG +P  +A++  L  LN+S N LT  I    GNL  L  L L F +        + +CS
Sbjct:    5 ISLFFIFLVIYAPL-VSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPC--DWRGVGCTNHRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRNLTSLEVFNVAGNRLSGEIPVGLPSSLQFLDISSNTFSGQIPSGLANLTQLQLLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCS 234          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 56/168 (33.33%), Postives = 86/168 (51.19%), Query Frame = 3
Query:  225 FVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPS-VLTNWKGNEGDPCGESWKGVACEG-SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            F+L+  I L    +   + + +  AL  L  +L  P+ VL +W     +PC  +W  V C   ++V+ +D+    LSG +   L  L +L+  +L  N+I   IP  L    NL SL+L  N+FSG +P S+  +  L +L ++ NSLT SI     N+  L  LDLS
Sbjct:    8 FILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPC--TWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLS 173          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.325e-13
Identity = 54/173 (31.21%), Postives = 87/173 (50.29%), Query Frame = 3
Query:  228 VLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGS----AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP--NLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIF 728
            +++L +F   S V      +D+ AL+ L  +L + SV  +W    G  C E W GV CEGS     V  + +   GL G +   L +L  LR  DLS N +   +P ++     L  L+L+ N  SG++   ++ +  +  LN+S NSL+  + D+ G   GL  L++S  +F
Sbjct:    3 IILLLVFFVGSSVSQPCHPNDLSALRELAGALKNKSVTESWLN--GSRCCE-WDGVFCEGSDVSGRVTKLVLPEKGLEGVISKSLGELTELRVLDLSRNQLKGEVPAEISKLEQLQVLDLSHNLLSGSVLGVVSGLKLIQSLNISSNSLSGKLSDV-GVFPGLVMLNVSNNLF 171          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: RLK5_ARATH (Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.019e-12
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 3
Query:  225 FVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSV-LTNWK-GNEGDPCGESWKGVACEGSA-VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDT-------------------------IPYQLP---PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIF 728
            + LIL + L+ + +   + + D   L+     L+ P+  L++W   N+  PC   W GV+C+ ++ VVS+D+S   L G    +L  L SL    L  NSI+ +                         IP  LP   PNL  L ++ NN S  +P S      L  LN++ N L+ +I    GN+  L  L L++ +F
Sbjct:    3 YCLILLLCLSSTYLPSLSLNQDATILRQAKLGLSDPAQSLSSWSDNNDVTPC--KWLGVSCDATSNVVSVDLSSFMLVGPFPSILCHLPSLHSLSLYNNSINGSLSADDFDTCHNLISLDLSENLLVGSIPKSLPFNLPNLKFLEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLF 199          

HSP 2 Score: 25.409 bits (54), Expect = 1.019e-12
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 2
Query:  722 NFSGDLPNSFISLFNISSLYLQNNQLTGSL 811
            N  G +P S   L ++ +L L  NQLTGS+
Sbjct:  223 NLVGPIPPSLSRLTSLVNLDLTFNQLTGSI 252          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  243 IFLTLSLVQCTTDSSDVQALQVLYTSLNSPS-VLTNWKGNEGDPCGESWKGVACEG-SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            + L L LV   + +++  AL  L  SL  P+ VL +W      PC  +W  V C   ++V  +D+    LSG +   L  L +L+  +L  N+I  TIP QL     L SL+L  NN SG +P ++  +  L +L ++ NSL+  I      +  L  LDLS
Sbjct:   13 LILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPC--TWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLS 172          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.591e-12
Identity = 51/176 (28.98%), Postives = 82/176 (46.59%), Query Frame = 3
Query:  225 FVLILSIFLTLSLVQCTTDS--------SDVQALQVLYTSLNSP-SVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 719
            F+L L I L   +  C++ +        +D Q LQ +   L  P   L +W G+    C   W G+ C    V+ I +    L G +   +  L +LRK  L  N++  +IP  L   PNL  + L +N  +G++P S+     L  L++S N L++ I     + + L  L+LSF
Sbjct:   31 FLLHLIICLLFFVPPCSSQAWDGVVITQADYQGLQAVKQELIDPRGFLRSWNGSGFSACSGGWAGIKCAQGQVIVIQLPWKSLGGRISEKIGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTLDLSNNLLSEIIPPNLADSSKLLRLNLSF 206          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.745e-12
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  414 VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLT--SLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 719
            +V I +S   LSG +   LS L +L   DLSGN++  +IP ++  +L    LNLA+N  +G++P S   + SL  LN+++N L   +    GNL  L  +DLSF
Sbjct:  606 LVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSF 709          

HSP 2 Score: 28.4906 bits (62), Expect = 3.745e-12
Identity = 10/32 (31.25%), Postives = 20/32 (62.50%), Query Frame = 2
Query:  716 FHNFSGDLPNSFISLFNISSLYLQNNQLTGSL 811
            F+N SG+L +   ++  +  LY++ N+ TG +
Sbjct:  709 FNNLSGELSSELSTMEKLVGLYIEQNKFTGEI 740          

HSP 3 Score: 57.7658 bits (138), Expect = 5.083e-11
Identity = 49/163 (30.06%), Postives = 71/163 (43.56%), Query Frame = 3
Query:  231 LILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWK-GNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            L L +F + S       SS+  +L     SL +PS+L++W   +    C   W GV C    V S+ +  L L G +   +S L +LR+                      L LA N FSG +P  I ++  L  L++S NSLT  +  +   L  L  LDLS
Sbjct:    7 LFLFLFFSFSSSAIVDLSSETTSLISFKRSLENPSLLSSWNVSSSASHC--DWVGVTCLLGRVNSLSLPSLSLRGQIPKEISSLKNLRE----------------------LCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLS 145          

HSP 4 Score: 30.8018 bits (68), Expect = 5.083e-11
Identity = 17/32 (53.12%), Postives = 23/32 (71.88%), Query Frame = 2
Query:  719 HNFSGDLPNSF-ISLFNISSLYLQNNQLTGSL 811
            ++FSG LP SF ISL  +SSL + NN L+G +
Sbjct:  147 NHFSGSLPPSFFISLPALSSLDVSNNSLSGEI 178          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.628e-12
Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 3
Query:  228 VLILSIFLTLSLVQCTTDSSDVQAL----QVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSA---VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLN---LASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            +L+L I     L Q    ++D+Q L    + L T+      L  W  +  + C  SW GV C+ +    V++++++GLGL+G++        +L   DLS N++   IP  L  NLTSL    L SN  +G +P  + S+V++  L +  N L   I +  GNL  L  L L+
Sbjct:    6 LLLLFILCFSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYC--SWTGVTCDNTGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLDLSSNNLVGPIPTAL-SNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALA 175          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: RPKL_ARATH (Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana GN=At4g34220 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 60/186 (32.26%), Postives = 86/186 (46.24%), Query Frame = 3
Query:  207 SRLIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSP-SVLTNWKGNEGDPCGESWKGVAC---------EGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQL--PPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSFTIF 728
            S L+ + VL   +F+   L    TD   V  L   Y+ L  P SVL NW  ++  PC   W GV C         +   V S+ +    L G++   L  +  LR  DLS N  + ++P  +     L S++L SNN SG+LP S+ S+ +L  LN+S N+ T  I      L  L  + LS   F
Sbjct:    6 SNLLFSLVLFHFLFVPTQLQALNTDG--VLLLTFKYSILTDPLSVLRNWNYDDATPC--LWTGVTCTELGKPNTPDMFRVTSLVLPNKHLLGSITPDLFSIPYLRILDLSSNFFNGSLPDSVFNATELQSISLGSNNLSGDLPKSVNSVTNLQLLNLSANAFTGEIPLNISLLKNLTVVSLSKNTF 187          
The following BLAST results are available for this feature:
BLAST of FC873632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
Y5129_ARATH2.454e-1332.39Probable LRR receptor-like serine/threonine-protei... [more]
Y4361_ARATH9.325e-1328.76Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH9.325e-1333.33Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
PSKR2_ARATH9.325e-1331.21Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
RLK5_ARATH1.019e-1228.64Receptor-like protein kinase 5 OS=Arabidopsis thal... [more]
BAK1_ARATH1.218e-1233.33BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
IMK3_ARATH1.591e-1228.98Probable leucine-rich repeat receptor-like protein... [more]
EXS_ARATH3.745e-1238.46Leucine-rich repeat receptor protein kinase EXS OS... [more]
GSO1_ARATH4.628e-1231.21LRR receptor-like serine/threonine-protein kinase ... [more]
RPKL_ARATH6.044e-1232.26Receptor protein kinase-like protein At4g34220 OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873632 ID=FC873632; Name=FC873632; organism=Citrus clementina; type=EST; length=844bp
CAGCAATGCCTCTCAACAACTTCTACTTGCCCCCTATCCCTAACCTCAGC
TTCTTCTTCTCTTTCGAATCCACGTTACTCTATCATGCACTTCACCACGC
CTAATCCTCACCTCTCTCAACACTGAACTGAACTCCTCAAACTACCAGAA
CCATAACCACAATGGCTGTTCAATACACCGCCGTTTTTCCCCTTCCCTTT
TCCACATCTCGTTTGATCGATGCCTTCGTGTTGATCCTGTCGATCTTCTT
AACTCTGTCTCTTGTTCAATGCACTACTGATTCTTCTGACGTTCAAGCAC
TTCAAGTATTGTACACTTCGCTAAACAGTCCTTCAGTGCTAACTAATTGG
AAAGGCAATGAAGGTGATCCATGTGGAGAGTCGTGGAAAGGGGTAGCTTG
TGAGGGATCAGCTGTCGTTTCCATTGACATTTCTGGGTTAGGACTCAGTG
GAACAATGGGATACCTGCTTTCAGATCTTCTGTCATTGAGAAAATTTGAT
TTGAGTGGCAACAGCATTCATGACACGATCCCATATCAATTACCTCCAAA
TCTTACCAGCCTAAATCTTGCAAGCAACAACTTTAGTGGGAATCTTCCTT
ATTCTATTGCTAGCATGGTCTCACTCTCTTATTTGAATGTTAGCCGTAAT
TCGCTTACCCAGTCAATCGGAGACATTTTTGGTAATCTTGCTGGCCTCGC
AACCTTGGACCTCTCTTTCACAATTTTTCTGGAGATCTTCCGAATTCATT
TATTTCATTGTTCAATATTTCTTCGCTCTATCTGCAGAACAATCAATTGA
CTGGTTCTCTTAATGTCTTTTCCGGCTGGCCTTTGACTACTCTA
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