FC873632

Overview
NameFC873632
Unique NameFC873632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10170 contig Ccv1_Contig10170:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.894e-12
Identity = 50/154 (32.47%), Postives = 87/154 (56.49%), Query Frame = 3
Query:  216 IDAFVLIL----SIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVV-SIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSL 656
            ++ F+L L    SI+   +L    +D + + +L   +TS+ S  +  +W  ++  PC  SW GV C+    V ++++S  G+SG  G  +S L  L+K  LSGN    +IP QL     L  ++L+SN+F+GN+P ++ ++ +L  L++  NSL
Sbjct:    5 VNTFLLFLCSTSSIYAAFAL---NSDGAALLSLTRHWTSIPS-DITQSWNASDSTPC--SWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSL 152          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.031e-11
Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 3
Query:  237 LSIFLTLSLVQCTTDSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGS------AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPN--LTSLNLASNNFSGNLPYSIASM 617
            + +F  L L+Q  TD +DV  L+ +  +       TNW+G+   P    W G+ C          + SID S  GL+GT+   +  L  L+K DLS N++   +P  L     LT +NL+ NN SG++P S+ +M
Sbjct:  369 MEVFGLLQLLQTETDENDVTTLKNIQATYRIQK--TNWQGDPCVPIQFIWTGLNCSNMFPSIPPRITSIDFSNFGLNGTITSDIQYLNQLQKLDLSNNNLTGKVPEFLAKMKLLTFINLSGNNLSGSIPQSLLNM 501          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 51/166 (30.72%), Postives = 81/166 (48.80%), Query Frame = 3
Query:  237 LSIFLTLSLVQCTT-DSSDVQALQVLYTSLNSPS--VLTNWKGNEGDPCGESWKGVACEGSA--VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDL 713
            L++ L L  V C    S++VQAL+    ++      V++NW     DPC   W G+ C  S   V+ I+IS   + G +   L  +  L++  L GN +  TIP ++    NL  L+L +N+  G +P  I S+  +  +N+  N LT  +    GNL  L  L +
Sbjct:    9 LALVLGLFFVSCDGFASNEVQALRRFKEAIYEDPLLVMSNWNDPNSDPC--DWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLPAELGNLKYLRELHI 172          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.346e-11
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  324 NSPSVLTNWKG-NEGDPCGESWKGVACEGSA--VVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            N  ++L +W   +  D C  SW+GV C+  +  VVS+++S L L G +   + DL +L+  DL GN +   IP ++    +L  L+L+ N   G++P+SI+ +  L  LN+  N LT  +      +  L  LDL+
Sbjct:   42 NLVNMLLDWDDVHNSDLC--SWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLA 175          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.339e-11
Identity = 48/170 (28.24%), Postives = 79/170 (46.47%), Query Frame = 3
Query:  213 LIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNSP-SVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLSF 719
            ++   +++ S  L+L   Q  T  +DV ALQ ++  L  P + L +WK  + DPC  +W GV C                 + G+L    L L   +L+G    +     L  NLT LN   N+ +G +P  + ++  L +L +S N LT S+    G+L+ L  L + +
Sbjct:    7 VVGIILVVSSCCLSLLDAQEITHPTDVSALQYVHRKLKDPLNHLQDWK--KTDPCASNWTGVICIPDP-------------SDGFLHVKELRLLNMNLTGQLAPE---LGLLSNLTILNFMWNDLTGQIPPELGNLTHLIFLLLSGNQLTGSLPQELGSLSNLLILQIDY 158          

HSP 2 Score: 27.7202 bits (60), Expect = 2.339e-11
Identity = 10/31 (32.26%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  719 HNFSGDLPNSFISLFNISSLYLQNNQLTGSL 811
            ++ +G +P  + +L N+    + NN+LTG+L
Sbjct:  183 NSITGQIPPEYSTLTNVLHFLMDNNKLTGNL 213          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 56/204 (27.45%), Postives = 87/204 (42.65%), Query Frame = 3
Query:  189 PLPFSTSRLIDAFVLILSIFLTLSLVQCTTDSSDVQALQVLYTSLNS--PSVLTNWKGNEGDPCGESWKGVACEGS--------AVVSID-------------------ISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATL 707
            P+P   +  +  F + LS+FL   +   +  +++V AL     S NS  PSV + W  ++ DPC   W  + C  S         VVS+                    IS   L+G +   + D   L   DLS NS+   IP  L    NL  L L SN  +G +P  +   VSL  L +  N L++++    G ++ L ++
Sbjct:    6 PIPRKKALTVSHFSITLSLFLAFFISSTSASTNEVSALISWLHSSNSPPPSVFSGWNPSDSDPC--QWPYITCSSSDNKLVTEINVVSVQLALPFPPNISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESI 207          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: HSL2_ARATH (LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.117e-11
Identity = 59/175 (33.71%), Postives = 83/175 (47.43%), Query Frame = 3
Query:  237 LSIFLTLSLVQC---TTDSSDVQAL-QVLYTSLNSPSV-LTNW--KGNEGDPCGESWKGVAC---EGS--AVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTI---PYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDLS 716
            L  FL+L L+ C    + + D + L +V  T L  P   L +W   G+   PC  +W G+ C   +GS  AV +ID+SG  +SG   Y    + +L    LS N+++ TI   P  L   L +L L  NNFSG LP        L  L +  N  T  I   +G L  L  L+L+
Sbjct:    7 LFFFLSLLLLSCFLQVSSNGDAEILSRVKKTRLFDPDGNLQDWVITGDNRSPC--NWTGITCHIRKGSSLAVTTIDLSGYNISGGFPYGFCRIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLPEFSPEFRKLRVLELESNLFTGEIPQSYGRLTALQVLNLN 179          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 61.2326 bits (147), Expect = 6.620e-11
Identity = 43/164 (26.22%), Postives = 73/164 (44.51%), Query Frame = 3
Query:  228 VLILSIFLTLSLVQCTT--DSSDVQALQVLYTSLNSPSVLTNWKGNEGDPCGESWKGVACEGSAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPPNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLATLDL 713
            +LI+SI L+ S     T  +++ +   +  +T+  S S L++W          SW GVAC   +++ ++++  G+ GT                      +  P+   PNLT ++L+ N FSG +         L Y ++S N L   I    G+L+ L TL L
Sbjct:   31 LLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSWYGVACSLGSIIRLNLTNTGIEGTF---------------------EDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIPPELGDLSNLDTLHL 173          

HSP 2 Score: 26.9498 bits (58), Expect = 6.620e-11
Identity = 12/28 (42.86%), Postives = 20/28 (71.43%), Query Frame = 2
Query:  728 SGDLPNSFISLFNISSLYLQNNQLTGSL 811
            +G +P+SF +L  + +LYL  N L+GS+
Sbjct:  203 TGPIPSSFGNLTKLVNLYLFINSLSGSI 230          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 55/167 (32.93%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  243 IFLTLSLVQCTTDSSDVQALQVLYTSLNSP----SVLTNWKGNEGDPCGESWKGVACEG-SAVVSIDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLPP--NLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQSIGDIFGNLAGLA--TLDLS 716
            + L L  V   T  + V AL  L +SL+S     ++L +W      PC  SW  V C   ++V  +D+    LSG +   L+ L +L+  +L  N+I   IP +L     L SL+L +NN SG +P S+  +  L +L +  NSL+   G+I  +L  L    LD+S
Sbjct:   12 LILFLDFVSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPC--SWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLS---GEIPRSLTALPLDVLDIS 173          
BLAST of FC873632 vs. ExPASy Swiss-Prot
Match: PII2_ARATH (Piriformospora indica-insensitive protein 2 OS=Arabidopsis thaliana GN=PII-2 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 6.796e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  423 IDISGLGLSGTMGYLLSDLLSLRKFDLSGNSIHDTIPYQLP--PNLTSLNLASNNFSGNLPYSIASMVSLSYLNVSRNSLTQS--IGDIFGNLAGLATLDLS 716
            +D+S    SGT+     DL+SL K DLS N +   +P +L    NLT L+L +N FSG L  +I ++ SL+ L +S N + +   +G  +G ++ L  LDLS
Sbjct:  220 LDLSRNSFSGTLPTSFGDLVSLLKLDLSNNLLEGNLPQELGFLKNLTLLDLRNNRFSGGLSKNIENIQSLTELVLSNNPMGEEDMVGTNWGKMSNLVVLDLS 321          

HSP 2 Score: 25.0238 bits (53), Expect = 6.796e-11
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  731 GDLPNSFISLFNISSLYLQNNQLTG 805
            G++P S  +L  +  L L NN LTG
Sbjct:  327 GEIPTSLTNLKRLRFLGLNNNNLTG 351          
The following BLAST results are available for this feature:
BLAST of FC873632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RPK1_IPONI7.894e-1232.47Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
Y4245_ARATH1.031e-1133.33Probable LRR receptor-like serine/threonine-protei... [more]
Y1634_ARATH1.346e-1130.72Probable LRR receptor-like serine/threonine-protei... [more]
ERL1_ARATH1.346e-1132.35LRR receptor-like serine/threonine-protein kinase ... [more]
Y5374_ARATH2.339e-1128.24Probable LRR receptor-like serine/threonine-protei... [more]
RCH1_ARATH5.117e-1127.45LRR receptor-like serine/threonine-protein kinase ... [more]
HSL2_ARATH5.117e-1133.71LRR receptor-like serine/threonine-protein kinase ... [more]
Y4885_ARATH6.620e-1126.22Probable LRR receptor-like serine/threonine-protei... [more]
SERK5_ARATH6.682e-1132.93Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
PII2_ARATH6.796e-1138.24Piriformospora indica-insensitive protein 2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1DE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873632 ID=FC873632; Name=FC873632; organism=Citrus clementina; type=EST; length=844bp
CAGCAATGCCTCTCAACAACTTCTACTTGCCCCCTATCCCTAACCTCAGC
TTCTTCTTCTCTTTCGAATCCACGTTACTCTATCATGCACTTCACCACGC
CTAATCCTCACCTCTCTCAACACTGAACTGAACTCCTCAAACTACCAGAA
CCATAACCACAATGGCTGTTCAATACACCGCCGTTTTTCCCCTTCCCTTT
TCCACATCTCGTTTGATCGATGCCTTCGTGTTGATCCTGTCGATCTTCTT
AACTCTGTCTCTTGTTCAATGCACTACTGATTCTTCTGACGTTCAAGCAC
TTCAAGTATTGTACACTTCGCTAAACAGTCCTTCAGTGCTAACTAATTGG
AAAGGCAATGAAGGTGATCCATGTGGAGAGTCGTGGAAAGGGGTAGCTTG
TGAGGGATCAGCTGTCGTTTCCATTGACATTTCTGGGTTAGGACTCAGTG
GAACAATGGGATACCTGCTTTCAGATCTTCTGTCATTGAGAAAATTTGAT
TTGAGTGGCAACAGCATTCATGACACGATCCCATATCAATTACCTCCAAA
TCTTACCAGCCTAAATCTTGCAAGCAACAACTTTAGTGGGAATCTTCCTT
ATTCTATTGCTAGCATGGTCTCACTCTCTTATTTGAATGTTAGCCGTAAT
TCGCTTACCCAGTCAATCGGAGACATTTTTGGTAATCTTGCTGGCCTCGC
AACCTTGGACCTCTCTTTCACAATTTTTCTGGAGATCTTCCGAATTCATT
TATTTCATTGTTCAATATTTCTTCGCTCTATCTGCAGAACAATCAATTGA
CTGGTTCTCTTAATGTCTTTTCCGGCTGGCCTTTGACTACTCTA
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