FC875490

Overview
NameFC875490
Unique NameFC875490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.130e-95
Identity = 172/181 (95.03%), Postives = 178/181 (98.34%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MVKMT+IARVTDGLPLAEGLDDGRDL D++MYKQQVKALFKNLSRGQN+ASRMS+ETGPYVFHYIIEGRVCYLTMCDR+YPKKLAFQYLEDLKNEFERVNG  IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY
Sbjct:    1 MVKMTLIARVTDGLPLAEGLDDGRDLPDSDMYKQQVKALFKNLSRGQNDASRMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 181          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_RAT (Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 91/182 (50.00%), Postives = 127/182 (69.78%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_PONAB (Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 91/182 (50.00%), Postives = 127/182 (69.78%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_MOUSE (Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 91/182 (50.00%), Postives = 127/182 (69.78%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_HUMAN (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.741e-45
Identity = 91/182 (50.00%), Postives = 127/182 (69.78%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_CHICK (Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.274e-45
Identity = 90/182 (49.45%), Postives = 128/182 (70.33%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL++EF+  +G ++ T +RPY+FI+FDT+IQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_CRIGR (Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.129e-44
Identity = 90/182 (49.45%), Postives = 126/182 (69.23%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++  G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLN--EQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: S22BB_DANRE (Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.129e-43
Identity = 86/182 (47.25%), Postives = 124/182 (68.13%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGLDDGRDL-RDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIAR+ DGLPLA  + +   + RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF   +G ++ T +RPY+FI+FDT+IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L+S S+ Y
Sbjct:    1 MVLLTMIARLADGLPLAASMQEDEQMGRDLQQYQSQAKQLFRKLN--EQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: SC22B_XENTR (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.631e-43
Identity = 87/182 (47.80%), Postives = 126/182 (69.23%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV +TMIARV DGLPLA  + +D +  RD + Y+ Q K LF+ L+  +   +R ++E G   FHY+IE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FD +IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L++ S+ Y
Sbjct:    1 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQNQAKQLFRKLN--EQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNYIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLSKKY 180          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: S22BA_DANRE (Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.572e-41
Identity = 84/182 (46.15%), Postives = 120/182 (65.93%), Query Frame = 1
Query:  145 MVKMTMIARVTDGLPLAEGL-DDGRDLRDAEMYKQQVKALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            MV  TMI RV D LPLA  + +D +  RD + Y+ Q K L + L+  +   +R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF    GA++ + +RPY+FI+FDT+IQKT K Y D+R +RN+  +N EL++V +IM  N++EVL  GE L  +   +S L+S S+ Y
Sbjct:    1 MVLQTMIVRVADSLPLAASMQEDEQSGRDLQKYQSQAKQLCRKLN--EQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKY 180          
The following BLAST results are available for this feature:
BLAST of FC875490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SEC22_ARATH3.130e-9595.0325.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
SC22B_RAT1.741e-4550.00Vesicle-trafficking protein SEC22b OS=Rattus norve... [more]
SC22B_PONAB1.741e-4550.00Vesicle-trafficking protein SEC22b OS=Pongo abelii... [more]
SC22B_MOUSE1.741e-4550.00Vesicle-trafficking protein SEC22b OS=Mus musculus... [more]
SC22B_HUMAN1.741e-4550.00Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
SC22B_CHICK2.274e-4549.45Vesicle-trafficking protein SEC22b OS=Gallus gallu... [more]
SC22B_CRIGR1.129e-4449.45Vesicle-trafficking protein SEC22b OS=Cricetulus g... [more]
S22BB_DANRE2.129e-4347.25Vesicle-trafficking protein SEC22b-B OS=Danio reri... [more]
SC22B_XENTR3.631e-4347.80Vesicle-trafficking protein SEC22b OS=Xenopus trop... [more]
S22BA_DANRE7.572e-4146.15Vesicle-trafficking protein SEC22b-A OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionC31404E06EF CTVClemen1 Citrus clementina cDNA clone C31404E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875490 ID=FC875490; Name=FC875490; organism=Citrus clementina; type=EST; length=689bp
GATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGC
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