FC875490

Overview
NameFC875490
Unique NameFC875490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 42/143 (29.37%), Postives = 74/143 (51.75%), Query Frame = 1
Query:  265 KNLSRGQNEASRMSIETGPYVFH-YIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNG-AQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIY 687
            K ++   N   R  +E   YVFH Y     +C +   D+ YP ++A+  L  + +EF   N   + E+ A   +F + DT++ K    YQD +    I ++  EL E   ++ + ++ VL  GEKLD + + S  L+++SR++
Sbjct:   45 KTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAVTLSFPELDTYLSK----YQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLDDLIQRSDNLSTQSRMF 183          
BLAST of FC875490 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 38/137 (27.74%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  271 LSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSES 678
            L++  +E ++++   G Y+FHYI + R+ YL + D  + +  AF +L ++K  F+   G++ +TA  PYA   +F + +    K + +++    +A+   ++ E+  IM RN+  V   GEKL+ + + +  L   S
Sbjct:   33 LAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKYHSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSS 168          
The following BLAST results are available for this feature:
BLAST of FC875490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YKT6_SCHPO4.329e-1229.37Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
VAMP7_CHICK7.385e-1227.74Vesicle-associated membrane protein 7 OS=Gallus ga... [more]

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Properties
Property NameValue
Genbank descriptionC31404E06EF CTVClemen1 Citrus clementina cDNA clone C31404E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875490 ID=FC875490; Name=FC875490; organism=Citrus clementina; type=EST; length=689bp
GATCCCTTCATTTGATACACAGCTCTTTTCTCTCTCTGTCGACCCTTGTC
TTCTCTCTTCTTCAGATCGTTGAATTCGCGTAGAAAATCCCAAATGCAAA
AAGGGTGATTTGGTGTAGCAGAGGAATTTTAAAGTGAGCCAAAAATGGTG
AAGATGACGATGATTGCCCGTGTTACTGATGGTCTTCCATTGGCGGAGGG
ACTGGATGATGGTCGTGATTTGAGAGATGCTGAGATGTACAAGCAACAAG
TCAAGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGCTTCAAGG
ATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTGAAGGACG
TGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAGCTGGCCT
TTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAATGGGGCT
CAGATTGAAACTGCTGCCAGGCCTTACGCTTTCATAAAATTTGATACATT
CATACAGAAAACAAAGAAATTGTACCAGGACACGCGTACCCAGCGGAATA
TTGCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCGG
AATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTGA
AATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGC
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