FC876228
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB8_ARATH (U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 1.600e-34 Identity = 74/113 (65.49%), Postives = 83/113 (73.45%), Query Frame = 3 Query: 135 MATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPL-----PKPQLEHANPNPQTLISVLTSKSSPLESKLE 458 MA P+DF CPISLEIMSDPVIL SGHTFDR SIQ+W+DSG+RTCPITKLPL + P LIPNHALRSLI NF L P+ Q EH++ Q LIS L S+SS SKLE Sbjct: 1 MAFDLPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPNHALRSLILNFAHVSLKESSRPRTQQEHSHSQSQALISTLVSQSSSNASKLE 113
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 3.582e-18 Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 3 Query: 87 INPSRVSCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQT 407 + P S V D PD+F CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+ + +L PN+ LRSLIS + T +P PN T Sbjct: 253 MGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPT 358
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 3.582e-18 Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 3 Query: 87 INPSRVSCVRDRVKVDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQT 407 + P S V D PD+F CPISLE+M DPVI+S+G T++RA I++W+ SGH TCP T+ + +L PN+ LRSLIS + T +P PN T Sbjct: 253 MGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKM-STSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPT 358
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB13_ARATH (U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.965e-16 Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLES 449 PDDF CPISLE+M DPVI+SSG T++R I++W++ GH TCP T+ L +L PN+ LRSLI+ + +P ++ P+ ++S SSP E+ Sbjct: 257 PDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQAL-TSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRK----VSSFSSPAEA 351
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.567e-16 Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 3 Query: 129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNF---------TRTPLPK 371 +D+ Q P F CPISL++MSDPV +S+G T+DR SI W+ G+ TCP+T++ L D +LIPNH LR LI + R P PK Sbjct: 8 LDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRVALSDF-TLIPNHTLRRLIQEWCVANRSNGVERIPTPK 96
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.352e-16 Identity = 48/115 (41.74%), Postives = 65/115 (56.52%), Query Frame = 3 Query: 129 VDMATQFPDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHR-TCPITKLPLPDQPSLIPNHALRSLISNF---------TRTPLPKPQLEHANPNPQTLISVLTSKSSPL 443 +D+ Q P F CPISLE+M DPV + +G T+DRASI+ W+ G+ TCP+T+ PL D +LIPNH LR LI + R P PK P T + L S++S + Sbjct: 8 LDLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPLSDF-TLIPNHTLRRLIQEWCVANRSNGVERIPTPK------QPADPTSVRALLSQASAI 115
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB12_ARATH (U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 4.841e-15 Identity = 41/103 (39.81%), Postives = 62/103 (60.19%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSSPLESKLE 458 P++F CPISLE+M+DPVI+SSG T++R I++WL+ GH TCP T+ L + PN+ LRSLI+ + + +P P + S +S +K+E Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSD-IMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIE 358
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 6.322e-15 Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQ 404 P +F CPI+LEIM DPVI+++G T+++ SIQ+W D+GH+TCP T+ L D SL PN AL++LI + K + +P+ Q Sbjct: 291 PHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQEL-DHLSLAPNFALKNLIMQWCEKNNFKIPEKEVSPDSQ 374
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 6.322e-15 Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLIS 344 P+ F CPISLE+M DPVI+S+G T++R+SIQ+WLD+GH+TCP ++ L L PN+ L+SLI+ Sbjct: 249 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL-HAGLTPNYVLKSLIA 312
BLAST of FC876228 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 8.257e-15 Identity = 40/96 (41.67%), Postives = 60/96 (62.50%), Query Frame = 3 Query: 150 PDDFNCPISLEIMSDPVILSSGHTFDRASIQRWLDSGHRTCPITKLPLPDQPSLIPNHALRSLISNFTRTPLPKPQLEHANPNPQTLISVLTSKSS 437 P DF CPISL++M+DPVI+S+G T+DR SI RW++ GH TCP T L D ++PN AL++LI + + E + ++ S L +K++ Sbjct: 306 PKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDS-RIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAA 400 The following BLAST results are available for this feature:
BLAST of FC876228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 36
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876228 ID=FC876228; Name=FC876228; organism=Citrus clementina; type=EST; length=459bpback to top |