FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PELCD (Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY G+ V MT P IGN G+N +D ES +  L+G +++      SNWR   TL +YL +  I+GI  +DTRA+ R +R +G+  G++S+ +   +  + +  ++  IVG DL+ +V+ KEP
Sbjct:   45 SYCGEIVTMTYPLIGNYGINPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRDNGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECOL6 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O6 GN=carA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  EP
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEP 167          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_AQUAE (Carbamoyl-phosphate synthase small chain OS=Aquifex aeolicus GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY GQ V+MT   IGN GVN +D ES+   + G V++      SNWR  ++L  YL E N++GI  +DTRA+ +++R+ GS+ GV+ST E K  ++L++ +R   DI   +L+ +VS K+
Sbjct:   47 SYKGQIVVMTYTQIGNYGVNDEDIESKSVQVNGFVVKEAFFRYSNWRAKKSLDEYLKENNVVGIYGIDTRALVKKIREKGSMKGVISTVE-KDPKKLVQKARELPDISEQNLVEEVSAKD 165          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNP6 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P +GNTGVN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GI  +DTRA+T+ LR  G++ G +ST     ++   E+  +  + G++L+  V+   P
Sbjct:   61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRP 180          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNE7 (Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus (strain PCC 7942) GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P +GNTGVN +DEES +  ++GL+ R+++   SNWR   +L +YL + NI+GI  +DTRA+T+ LR  G++ G +ST     ++   E+  +  + G++L+  V+   P
Sbjct:   61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRP 180          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIMB (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup B GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIMA (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup A GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIGO (Carbamoyl-phosphate synthase small chain OS=Neisseria gonorrhoeae GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNETVAIADIDTRRLTMLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAKEVSCTE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCAI (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=carA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGK 354
            SY+ Q V +T+PHIGN G N +DEES + ++ GL+IR LS+  SN+R  ++  +YL E NI+ ISD+DTR +TR LR  GS  G +  ++ ++       ++++  +  +DL   VS K
Sbjct:   51 SYSHQIVTLTHPHIGNVGTNSNDEESSKIYIKGLIIRDLSLTASNYRNKKSFSSYLKENNIIAISDIDTRKLTRILRTKGSQNGCIIEDKKQNYSIAYNKAKNFISLQDLDLAKKVSTK 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEPK (Carbamoyl-phosphate synthase small chain OS=Pseudomonas putida (strain KT2440) GN=carA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19
Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG   +D ES + + AGLVIR L +  SNWR  ++L  YL   N++ I+ +DTR +TR LR+ G+  G +   ++ S++  +  +R +  + G+DL   VS KE
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAESSRVWSAGLVIRDLPLLASNWRNTQSLPEYLKANNVVAIAGIDTRRLTRILREKGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVSTKE 166          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_PELCD3.356e-1938.33Carbamoyl-phosphate synthase small chain OS=Peloba... [more]
CARA_ECOL63.356e-1942.98Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_AQUAE3.356e-1941.67Carbamoyl-phosphate synthase small chain OS=Aquife... [more]
CARA_SYNP65.724e-1939.17Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_SYNE75.724e-1939.17Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_NEIMB5.724e-1941.67Carbamoyl-phosphate synthase small chain OS=Neisse... [more]
CARA_NEIMA5.724e-1941.67Carbamoyl-phosphate synthase small chain OS=Neisse... [more]
CARA_NEIGO5.724e-1941.67Carbamoyl-phosphate synthase small chain OS=Neisse... [more]
CARA_BUCAI5.724e-1940.34Carbamoyl-phosphate synthase small chain OS=Buchne... [more]
CARA_PSEPK7.476e-1941.67Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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