FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PELCD (Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19 Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY G+ V MT P IGN G+N +D ES + L+G +++ SNWR TL +YL + I+GI +DTRA+ R +R +G+ G++S+ + + + + ++ IVG DL+ +V+ KEP Sbjct: 45 SYCGEIVTMTYPLIGNYGINPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRDNGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECOL6 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O6 GN=carA PE=3 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19 Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ EP Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEP 167
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_AQUAE (Carbamoyl-phosphate synthase small chain OS=Aquifex aeolicus GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19 Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY GQ V+MT IGN GVN +D ES+ + G V++ SNWR ++L YL E N++GI +DTRA+ +++R+ GS+ GV+ST E K ++L++ +R DI +L+ +VS K+ Sbjct: 47 SYKGQIVVMTYTQIGNYGVNDEDIESKSVQVNGFVVKEAFFRYSNWRAKKSLDEYLKENNVVGIYGIDTRALVKKIREKGSMKGVISTVE-KDPKKLVQKARELPDISEQNLVEEVSAKD 165
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNP6 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P +GNTGVN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GI +DTRA+T+ LR G++ G +ST ++ E+ + + G++L+ V+ P Sbjct: 61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRP 180
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNE7 (Carbamoyl-phosphate synthase small chain OS=Synechococcus elongatus (strain PCC 7942) GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 47/120 (39.17%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P +GNTGVN +DEES + ++GL+ R+++ SNWR +L +YL + NI+GI +DTRA+T+ LR G++ G +ST ++ E+ + + G++L+ V+ P Sbjct: 61 SYCGQIVSFTYPELGNTGVNPEDEESARPQVSGLIARNVARRHSNWRADRSLPDYLQQHNIVGIYGIDTRALTQHLRSTGAMNGGISTTILDPEELWAEVKAAPSMEGLNLVDQVTTDRP 180
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIMB (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup B GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIMA (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup A GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_NEIGO (Carbamoyl-phosphate synthase small chain OS=Neisseria gonorrhoeae GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNETVAIADIDTRRLTMLLREKGAQGGAILTGADATVEKAQELIAAFGSMVGKDLAKEVSCTE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCAI (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=carA PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.724e-19 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGK 354 SY+ Q V +T+PHIGN G N +DEES + ++ GL+IR LS+ SN+R ++ +YL E NI+ ISD+DTR +TR LR GS G + ++ ++ ++++ + +DL VS K Sbjct: 51 SYSHQIVTLTHPHIGNVGTNSNDEESSKIYIKGLIIRDLSLTASNYRNKKSFSSYLKENNIIAISDIDTRKLTRILRTKGSQNGCIIEDKKQNYSIAYNKAKNFISLQDLDLAKKVSTK 169
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEPK (Carbamoyl-phosphate synthase small chain OS=Pseudomonas putida (strain KT2440) GN=carA PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19 Identity = 50/120 (41.67%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG +D ES + + AGLVIR L + SNWR ++L YL N++ I+ +DTR +TR LR+ G+ G + ++ S++ + +R + + G+DL VS KE Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAESSRVWSAGLVIRDLPLLASNWRNTQSLPEYLKANNVVAIAGIDTRRLTRILREKGAQNGCILAGDNISEEAAIAAARGFPGLKGMDLAKVVSTKE 166 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |