FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNPX (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain WH8102) GN=carA PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.483e-22 Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SYAGQ V T P +GNTGVN DD+E+ G++ R L+ SNWRC+E+L N++ ++GI VDTRA+ RRLR G++ GV+S++ L E+ + + G++L S VS EP Sbjct: 51 SYAGQLVTFTYPELGNTGVNGDDQEADHPHARGVIARQLAPCASNWRCSESLDNWMERHGLVGICGVDTRALVRRLRDGGAINGVISSDGRSPADLLAEVRHAPSMEGLNLASQVSTTEP 170
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_TERTT (Carbamoyl-phosphate synthase small chain OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=carA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.232e-21 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG N +DEE + + GLVIR L + SN+R +++L YL+ +NI+GI+D+DTR +TR LR G+L G + + + E LE +R + + G+DL +VS K+ Sbjct: 55 SYARQIVTLTYPHIGNTGTNSEDEECKTIWATGLVIRDLPLLASNFRNSQSLDQYLSSKNILGIADIDTRRLTRLLRDKGALAGCIMAGD-VDEAEALETARGFAGLQGMDLAKEVSTKD 173
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PHOLL (Carbamoyl-phosphate synthase small chain OS=Photorhabdus luminescens subsp. laumondii GN=carA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-21 Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN GVN D+ES + GLVIR L + TSN+RC ETL +YL NI+ I+D+DTR +TR LR+ GS G + + Q LE ++++ + G+DL +V+ K+ Sbjct: 47 SYSRQIVTLTYPHIGNVGVNSVDKESLKVQAQGLVIRDLPLLTSNFRCEETLSDYLKRHNIVAIADIDTRKLTRLLREKGSQNGCIIAGKQIDAQVALEKAQAFPGLEGMDLAKEVTTKQ 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HALER (Carbamoyl-phosphate synthase small chain OS=Halomonas eurihalina GN=carA PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20 Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL----STEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SY+ Q V +T PHIGNTGVN +D ES AGLVIR L + S++RC +++ +YLA++N++GI+D+ TR +TR LR GS G + E ++ LE +R++ + G+DL VS EP Sbjct: 47 SYSRQIVTLTYPHIGNTGVNSEDVESSSIAAAGLVIRDLPLLASSFRCEQSMSDYLAQQNVLGIADMHTRRLTRLLRDKGSQNGAILAGPDAEGEDAEARALEAARAFPGLKGMDLAKVVSCAEP 171
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNY3 (Carbamoyl-phosphate synthase small chain OS=Synechocystis sp. (strain PCC 6803) GN=carA PE=3 SV=2) HSP 1 Score: 97.0561 bits (240), Expect = 3.035e-20 Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SY GQ V T P +GNTGVN +DEES + G+V R+++ SNWR ++L +YL E I+GI +DTRA+TR+LR G++ G +STE + + L + + + G++L+ +V+ E Sbjct: 51 SYCGQIVTFTYPELGNTGVNAEDEESIHPHVKGVVARNITRRPSNWRSTQSLPDYLVEHKIIGIYGIDTRALTRKLRSIGAMNGGISTEILEPEALLHHIQAAPSMAGLNLVKEVTTHE 169
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEST (Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri GN=carA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20 Identity = 51/120 (42.50%), Postives = 77/120 (64.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PH+GNTG D ES + + AGLVIR L + SNWR ++L +YL E + + I+ +DTR +TR LR+ G+ G + ++++ LE++RS+ + G+DL +VS KE Sbjct: 51 SYAKQIVTLTYPHVGNTGTTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILREKGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKE 170
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSESM (Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae pv. tomato GN=carA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.153e-19 Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG +D ES + + AGLVIR L + SNWR +LG+YL N++ I+ +DTR +TR LR+ G+ G + ++ S++ + +R + + G+DL +VS K+ Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILREKGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKD 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CORDI (Carbamoyl-phosphate synthase small chain OS=Corynebacterium diphtheriae GN=carA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19 Identity = 60/124 (48.39%), Postives = 79/124 (63.71%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKS-DQELLEMSRSW-DIVGIDLISDVSGKE 357 SY Q V+ T P IGNTG N +D ES + ++AGLVIR LS SNWR +L + + E+NI+GIS VDTRAI R LR GS+ G+ S E +K EL+E+ +S + G DL S+VS +E Sbjct: 51 SYHRQIVVATAPQIGNTGWNDEDGESHGDKIWVAGLVIRDLSTAVSNWRAKRSLEDEMREQNIVGISGVDTRAIVRHLRNFGSVAAGIFSGEAAKQPHDELIEIVKSQPSMAGADLASEVSTQE 174
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBCH (Carbamoyl-phosphate synthase small chain OS=Vibrio cholerae GN=carA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.967e-19 Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + ++ + L ++ + + G+DL VS KE Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBPA (Carbamoyl-phosphate synthase small chain OS=Vibrio parahaemolyticus GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.356e-19 Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ KE Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESSSIHAQGLVIRDLPLIASNFRNEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |