FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METKA (Carbamoyl-phosphate synthase small chain OS=Methanopyrus kandleri GN=carA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL---STEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY GQ ++MT P  GN G+  +  ES +  + G V+R L  G  + R   TL  +L +  + GI+ VDTR +TR++R +G++ GVL     ++  SD+ELLE  R    I  +DL+  VS +E
Sbjct:   45 SYRGQILIMTFPMQGNYGILPEVGESDRVQVEGFVVRYLHDGPIHPRAEITLDEFLQDHGVPGIAGVDTRMLTRKIRTEGAMRGVLVPYEPDDQPSDEELLERVREVPHISEMDLVPQVSVRE 167          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAS1 (Carbamoyl-phosphate synthase small chain OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=carA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300
            SY GQ +  T P IGN G+N DD E+    L G+V++  S   SN+R  +T    L E +I GIS VDTR+ITR++R +G L    + E+S+ D  + ++
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFEALVPTLNGVVVKEASRQPSNFRKQKTFHEVLQEYDIPGISGVDTRSITRKIRNNGVLKAGFTDEKSEIDSMIAKL 146          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAHJ (Carbamoyl-phosphate synthase small chain OS=Staphylococcus haemolyticus (strain JCSC1435) GN=carA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13
Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG--------------SLIGVL-STEESKSDQELLEMSRSWDIVGIDL 333
            SY GQ +  T P IGN G+N DD E+    L G+V++  S   SN+R  +TL + L +  I GIS VDTR+ITR++RQ G              SLI  L STE  + + E +     +   G DL
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFEALTPTLNGVVVKEASTHPSNFRNQKTLHDVLVQYKIPGISGVDTRSITRKIRQHGVLKAGFTDNRDDIDSLINTLKSTELPRDEVETVSTKTPYVSTGSDL 172          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METJA (Carbamoyl-phosphate synthase small chain OS=Methanocaldococcus jannaschii GN=carA PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13
Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM----SRSWDIVGIDLISDVSGKEP 360
            SY GQ V+MT P  GN GV  D  ES      G V+R ++        ++ L ++L E +I GI D+DTR +TR++R  G +   L   E  SD E+ E+     R  DI  IDL+  VS KEP
Sbjct:   45 SYKGQIVMMTYPLEGNYGVKKDWFESDGIKAEGFVVREVT--------SKALDDFLKEYDIPGIQDIDTRFLTRKIRDKGVVKSCLKVAEEISDDEISELLERVKRYSDISDIDLVPLVSTKEP 160          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ARCFU (Carbamoyl-phosphate synthase small chain OS=Archaeoglobus fulgidus GN=carA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL---IGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SY GQ ++MT P IGN GVN +D ES    + G V++ L    SNWR   ++   L + ++ GI  VDTR +TR++R  GS+   IG+   +  K  ++ +E      I  IDL+  V  KE
Sbjct:   45 SYKGQILMMTYPLIGNYGVNREDFESDGVKVEGFVVKELCKNPSNWRSEMSVDELLKQYDVPGIEGVDTRMLTRKIRIYGSMKAAIGIGDVDREKLVRKAVEQP---FISDIDLVDKVCVKE 163          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP8 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M18 GN=carA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+  ++  + I  VS K
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M6 GN=carA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+  ++  + I  VS K
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP3 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M3 GN=carA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+  ++  + I  VS K
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP1 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M1 GN=carA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES      G+V+  +S   SNWR   TL  +L  + I GIS +DTRA+T+ +RQ G++   ++ ++  S Q L +  R+  ++  + I  VS K
Sbjct:   46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CYACA (Carbamoyl-phosphate synthase small chain OS=Cyanidium caldarium GN=carA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13
Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267
            SY  Q V++T P IGNTG N DD ES +    G+++++LS   SN+R   +L ++L    ++ I D+DTRA+   +R + +++ V+S E
Sbjct:   55 SYNEQLVVLTYPEIGNTGTNLDDYESLKIQAKGIILKNLSNAYSNFRAMRSLLSFLKRHKVVEIHDIDTRALVLHIRNNKTMLAVISNE 143          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_METKA2.752e-1338.21Carbamoyl-phosphate synthase small chain OS=Methan... [more]
CARA_STAS13.594e-1341.00Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAHJ4.694e-1338.89Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_METJA4.694e-1339.52Carbamoyl-phosphate synthase small chain OS=Methan... [more]
CARA_ARCFU4.694e-1337.70Carbamoyl-phosphate synthase small chain OS=Archae... [more]
CARA_STRP88.006e-1338.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP68.006e-1338.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP38.006e-1338.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRP18.006e-1338.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_CYACA8.006e-1338.20Carbamoyl-phosphate synthase small chain OS=Cyanid... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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