FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METKA (Carbamoyl-phosphate synthase small chain OS=Methanopyrus kandleri GN=carA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13 Identity = 47/123 (38.21%), Postives = 71/123 (57.72%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL---STEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY GQ ++MT P GN G+ + ES + + G V+R L G + R TL +L + + GI+ VDTR +TR++R +G++ GVL ++ SD+ELLE R I +DL+ VS +E Sbjct: 45 SYRGQILIMTFPMQGNYGILPEVGESDRVQVEGFVVRYLHDGPIHPRAEITLDEFLQDHGVPGIAGVDTRMLTRKIRTEGAMRGVLVPYEPDDQPSDEELLERVREVPHISEMDLVPQVSVRE 167
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAS1 (Carbamoyl-phosphate synthase small chain OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=carA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13 Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300 SY GQ + T P IGN G+N DD E+ L G+V++ S SN+R +T L E +I GIS VDTR+ITR++R +G L + E+S+ D + ++ Sbjct: 47 SYTGQIITFTYPLIGNYGINRDDFEALVPTLNGVVVKEASRQPSNFRKQKTFHEVLQEYDIPGISGVDTRSITRKIRNNGVLKAGFTDEKSEIDSMIAKL 146
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAHJ (Carbamoyl-phosphate synthase small chain OS=Staphylococcus haemolyticus (strain JCSC1435) GN=carA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13 Identity = 49/126 (38.89%), Postives = 66/126 (52.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG--------------SLIGVL-STEESKSDQELLEMSRSWDIVGIDL 333 SY GQ + T P IGN G+N DD E+ L G+V++ S SN+R +TL + L + I GIS VDTR+ITR++RQ G SLI L STE + + E + + G DL Sbjct: 47 SYTGQIITFTYPLIGNYGINRDDFEALTPTLNGVVVKEASTHPSNFRNQKTLHDVLVQYKIPGISGVDTRSITRKIRQHGVLKAGFTDNRDDIDSLINTLKSTELPRDEVETVSTKTPYVSTGSDL 172
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METJA (Carbamoyl-phosphate synthase small chain OS=Methanocaldococcus jannaschii GN=carA PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13 Identity = 49/124 (39.52%), Postives = 66/124 (53.23%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM----SRSWDIVGIDLISDVSGKEP 360 SY GQ V+MT P GN GV D ES G V+R ++ ++ L ++L E +I GI D+DTR +TR++R G + L E SD E+ E+ R DI IDL+ VS KEP Sbjct: 45 SYKGQIVMMTYPLEGNYGVKKDWFESDGIKAEGFVVREVT--------SKALDDFLKEYDIPGIQDIDTRFLTRKIRDKGVVKSCLKVAEEISDDEISELLERVKRYSDISDIDLVPLVSTKEP 160
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ARCFU (Carbamoyl-phosphate synthase small chain OS=Archaeoglobus fulgidus GN=carA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.694e-13 Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL---IGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SY GQ ++MT P IGN GVN +D ES + G V++ L SNWR ++ L + ++ GI VDTR +TR++R GS+ IG+ + K ++ +E I IDL+ V KE Sbjct: 45 SYKGQILMMTYPLIGNYGVNREDFESDGVKVEGFVVKELCKNPSNWRSEMSVDELLKQYDVPGIEGVDTRMLTRKIRIYGSMKAAIGIGDVDREKLVRKAVEQP---FISDIDLVDKVCVKE 163
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP8 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M18 GN=carA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13 Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P IGN G+N DD ES G+V+ +S SNWR TL +L + I GIS +DTRA+T+ +RQ G++ ++ ++ S Q L + R+ ++ + I VS K Sbjct: 46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M6 GN=carA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13 Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P IGN G+N DD ES G+V+ +S SNWR TL +L + I GIS +DTRA+T+ +RQ G++ ++ ++ S Q L + R+ ++ + I VS K Sbjct: 46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP3 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M3 GN=carA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13 Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P IGN G+N DD ES G+V+ +S SNWR TL +L + I GIS +DTRA+T+ +RQ G++ ++ ++ S Q L + R+ ++ + I VS K Sbjct: 46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRP1 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pyogenes serotype M1 GN=carA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13 Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P IGN G+N DD ES G+V+ +S SNWR TL +L + I GIS +DTRA+T+ +RQ G++ ++ ++ S Q L + R+ ++ + I VS K Sbjct: 46 SYNGQILTFTYPLIGNYGINRDDYESISPTCKGVVVSEVSRLASNWRKQMTLDAFLKIKGIPGISGIDTRALTKIIRQHGTMKATMA-DDGDSIQHLKDQLRA-TVLPTNTIEQVSTK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CYACA (Carbamoyl-phosphate synthase small chain OS=Cyanidium caldarium GN=carA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.006e-13 Identity = 34/89 (38.20%), Postives = 56/89 (62.92%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267 SY Q V++T P IGNTG N DD ES + G+++++LS SN+R +L ++L ++ I D+DTRA+ +R + +++ V+S E Sbjct: 55 SYNEQLVVLTYPEIGNTGTNLDDYESLKIQAKGIILKNLSNAYSNFRAMRSLLSFLKRHKVVEIHDIDTRALVLHIRNNKTMLAVISNE 143 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |