FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRA5 (Carbamoyl-phosphate synthase small chain OS=Streptococcus agalactiae serotype V GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES +    G+VI   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L  E +   + L  + +S  ++  D I  VS K
Sbjct:   45 SYNGQIITFTYPLIGNYGINRDDYESIRPTCKGVVIYEWAEYPSNWRQQMTLDEFLKLKGIPGISGIDTRALTKIIRKHGTMKACLINEGNSIHEALENLQKS--VLLNDQIEQVSTK 160          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRA3 (Carbamoyl-phosphate synthase small chain OS=Streptococcus agalactiae serotype III GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P IGN G+N DD ES +    G+VI   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L  E +   + L  + +S  ++  D I  VS K
Sbjct:   45 SYNGQIITFTYPLIGNYGINRDDYESIRPTCKGVVIYEWAEYPSNWRQQMTLDEFLKLKGIPGISGIDTRALTKIIRKHGTMKACLINEGNSIHEALENLQKS--VLLNDQIEQVSTK 160          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAW (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain MW2) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAS (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain MSSA476) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAR (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain MRSA252) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAN (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain N315) GN=carA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAM (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAAC (Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus (strain COL) GN=carA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 41/95 (43.16%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQ 285
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL + L    I GI+ VDTR+ITR++RQ G L    +  +   DQ
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASAHPSNFRQQKTLHDVLELHQIPGIAGVDTRSITRKIRQHGVLKAGFTDRKEDIDQ 141          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRMU (Carbamoyl-phosphate synthase small chain OS=Streptococcus mutans GN=carA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.784e-12
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267
            SY GQ +  T P +GN G+N DD ES +    G+V+   +   +NWR   TL  +L  +NI GIS +DTRA+T+ +R  G++   L+ E
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIKPTCKGVVVSENARRANNWRKQMTLDEFLKSKNIPGISGIDTRALTKIIRHHGTMKATLANE 134          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESDA (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=carA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.042e-12
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIV-GIDLISDVSGKEP 360
            SY GQ V MT P IGN G   +D ES     A L+++      SNWR   +L  ++      G+  +DTRA+TR LR +G++ G++ST E+     L E +R+   + G +L+  V+ ++P
Sbjct:   45 SYYGQMVCMTYPLIGNYGTCREDMESAGVHCAALLVKECCKKPSNWRSTMSLPEFMKRYEKPGVEGLDTRALTRHLRMNGAMRGIISTRET-DPAVLQERARALPAMKGHNLVPFVAPEKP 164          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_STRA51.046e-1238.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRA31.046e-1238.14Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STAAW1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAAS1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAAR1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAAN1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAAM1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STAAC1.046e-1243.16Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_STRMU1.784e-1240.45Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_DESDA3.042e-1235.54Carbamoyl-phosphate synthase small chain OS=Desulf... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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