FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DEIRA (Carbamoyl-phosphate synthase small chain OS=Deinococcus radiodurans GN=carA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261 SY GQ V +T PH+GN GV D ES + ++ G + R S SN+R ++L ++ + ++ I +DTRA+ RRLR G + GV++ Sbjct: 49 SYNGQIVTITYPHVGNYGVAIYDMESNKPYVRGFISREFSGEYSNYRAQQSLEAFMQQYGVVSIQGIDTRALVRRLRSGGVVKGVIA 135
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CLOAB (Carbamoyl-phosphate synthase small chain OS=Clostridium acetobutylicum GN=carA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12 Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SYAGQ + MT P IGN GVN +S+ + G +++++ SN+ + L ++G+ VDTR+IT+++R G++ ++S E S +EL +M + +IV D ++ VS KE Sbjct: 45 SYAGQIINMTYPLIGNYGVNESVNQSKCVYAKGFIVKNIDENPSNYTSEINIDQMLKNMGVVGVFGVDTRSITKKIRSYGTMKCIISNGE-LSIEELKKMMDASNIVD-DYVNTVSTKE 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACLM (Carbamoyl-phosphate synthase small chain OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=carA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11 Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300 SY GQ + T P +GN GVN DD ES +V+ + SNWR + +L +NI GI+ VDTRAIT+ +R+ G++ L + D ++ ++ Sbjct: 46 SYNGQILTFTYPIVGNYGVNRDDYESIHPTCKAVVVHEAARRPSNWRMQMSFDEFLKSKNIPGITGVDTRAITKIVREHGTMKASLVQARDEVDHQMSQL 145
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DEIGD (Carbamoyl-phosphate synthase small chain OS=Deinococcus geothermalis (strain DSM 11300) GN=carA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11 Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261 SY GQ V +T PH+GN GV D ES + ++ G + R S SN R ++L ++ + ++ I +DTRA+ RRLR G + GV++ Sbjct: 49 SYNGQIVTITYPHVGNYGVAIYDMESNKPYVRGFIAREFSGEYSNHRAQQSLEAFMQQYGVVSIQGIDTRALVRRLRTGGVVKGVIA 135
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CAUCR (Carbamoyl-phosphate synthase small chain OS=Caulobacter crescentus GN=carA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11 Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEES----RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSW-DIVGIDLISDVS 348 SY Q V T PH+GN GVN +D E + G + R + +NWR ++ R ++G++ VDTRA+TR++R+ G GV++ + + + D L+ +++W + G+DL D S Sbjct: 53 SYMAQIVAFTFPHVGNVGVNGEDVEQITGVAETAARGALFRDVPTVQANWRADGDFDAWMKARGVVGLAGVDTRALTRKIRETGMPHGVIAHSPDGQFDLAALVAKAKAWAGLEGLDLAKDAS 175
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ZYMMO (Carbamoyl-phosphate synthase small chain OS=Zymomonas mobilis GN=carA PE=3 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.510e-11 Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE-ESKSD-QELLEMSRSW-DIVGIDLISDVS 348 S+A Q + T PHIGN G N +D E++ G ++R SN+R ++L + + +G++ VDTRA+T LR+ G+ V++ + + + D L+E +RSW + G+DL VS Sbjct: 41 SFASQIINFTFPHIGNVGANREDVEAKTLHALGCIVREDVTAPSNFRSLWRFDSWLKDHDRIGLAGVDTRALTGLLRKKGAQNAVIAHDPKGQFDIPALIETARSWAGLQGMDLARSVS 159
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MARMM (Carbamoyl-phosphate synthase small chain OS=Maricaulis maris (strain MCS10) GN=carA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11 Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR----QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSDQELLEMSRSW--DIVGIDLISDVSGKE 357 SYAGQ V T PH+GN G N +DEE+ + G++ R+ ++WR T +L R I+ ++ +DTRA+TR++R+ G + + D E L+ + + + G +L +DV+ E Sbjct: 53 SYAGQVVCFTFPHVGNVGANGEDEEAASPQARKAAVGMIARAKITPPASWRADTTFEEWLCTRGIVALTGIDTRALTRKIREGGMQMCAIAHDAAGNIDIEALKAAAAGAPTMEGRELAADVARTE 178
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACLA (Carbamoyl-phosphate synthase small chain OS=Lactococcus lactis subsp. lactis GN=carA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11 Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300 SY GQ + T P +GN GVN DD ES +V+ + SNWR + +L +NI GI+ VDTRAIT+ +R+ G++ L + + ++ ++ Sbjct: 46 SYNGQILTFTYPIVGNYGVNRDDYESIHPTCKAVVVHEAACRPSNWRMQMSFDEFLKAKNIPGITGVDTRAITKIVREHGTMKASLVQARDEVEHQMSQL 145
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_OCHA4 (Carbamoyl-phosphate synthase small chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=carA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11 Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEES-KSDQELLE-MSRSWD-IVGIDLISDVS 348 SYAGQ V T PHIGN G N +D E + + G + ++ SN+R E L +L R ++ ++ +DTRA+T +R+ G+ V++ + S K D E L+ + +W + +DL DV+ Sbjct: 60 SYAGQIVTFTFPHIGNVGTNAEDVEDLTPANRHGAVGAIFKADITSPSNFRATEDLDAWLKNRGVIALAGIDTRALTSLIRERGAQNAVIAHDPSGKFDLEALKARAAAWSGLENLDLAKDVT 182
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRR6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=carA PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11 Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P +GN G+N DD ES G+V+ + SNWR TL +L + I GIS +DTRA+T+ +R+ G++ L+ D ++ + ++ D I VS K Sbjct: 46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLTHVGDSMDHVTDQLQAT--VLPTDNIKQVSTK 161 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |