FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DEIRA (Carbamoyl-phosphate synthase small chain OS=Deinococcus radiodurans GN=carA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.973e-12
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261
            SY GQ V +T PH+GN GV   D ES + ++ G + R  S   SN+R  ++L  ++ +  ++ I  +DTRA+ RRLR  G + GV++
Sbjct:   49 SYNGQIVTITYPHVGNYGVAIYDMESNKPYVRGFISREFSGEYSNYRAQQSLEAFMQQYGVVSIQGIDTRALVRRLRSGGVVKGVIA 135          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CLOAB (Carbamoyl-phosphate synthase small chain OS=Clostridium acetobutylicum GN=carA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.778e-12
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SYAGQ + MT P IGN GVN    +S+  +  G +++++    SN+     +   L    ++G+  VDTR+IT+++R  G++  ++S  E  S +EL +M  + +IV  D ++ VS KE
Sbjct:   45 SYAGQIINMTYPLIGNYGVNESVNQSKCVYAKGFIVKNIDENPSNYTSEINIDQMLKNMGVVGVFGVDTRSITKKIRSYGTMKCIISNGE-LSIEELKKMMDASNIVD-DYVNTVSTKE 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACLM (Carbamoyl-phosphate synthase small chain OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=carA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300
            SY GQ +  T P +GN GVN DD ES       +V+   +   SNWR   +   +L  +NI GI+ VDTRAIT+ +R+ G++   L     + D ++ ++
Sbjct:   46 SYNGQILTFTYPIVGNYGVNRDDYESIHPTCKAVVVHEAARRPSNWRMQMSFDEFLKSKNIPGITGVDTRAITKIVREHGTMKASLVQARDEVDHQMSQL 145          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DEIGD (Carbamoyl-phosphate synthase small chain OS=Deinococcus geothermalis (strain DSM 11300) GN=carA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261
            SY GQ V +T PH+GN GV   D ES + ++ G + R  S   SN R  ++L  ++ +  ++ I  +DTRA+ RRLR  G + GV++
Sbjct:   49 SYNGQIVTITYPHVGNYGVAIYDMESNKPYVRGFIAREFSGEYSNHRAQQSLEAFMQQYGVVSIQGIDTRALVRRLRTGGVVKGVIA 135          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CAUCR (Carbamoyl-phosphate synthase small chain OS=Caulobacter crescentus GN=carA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEES----RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSW-DIVGIDLISDVS 348
            SY  Q V  T PH+GN GVN +D E      +    G + R +    +NWR       ++  R ++G++ VDTRA+TR++R+ G   GV++ + + + D   L+  +++W  + G+DL  D S
Sbjct:   53 SYMAQIVAFTFPHVGNVGVNGEDVEQITGVAETAARGALFRDVPTVQANWRADGDFDAWMKARGVVGLAGVDTRALTRKIRETGMPHGVIAHSPDGQFDLAALVAKAKAWAGLEGLDLAKDAS 175          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ZYMMO (Carbamoyl-phosphate synthase small chain OS=Zymomonas mobilis GN=carA PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.510e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE-ESKSD-QELLEMSRSW-DIVGIDLISDVS 348
            S+A Q +  T PHIGN G N +D E++     G ++R      SN+R      ++L + + +G++ VDTRA+T  LR+ G+   V++ + + + D   L+E +RSW  + G+DL   VS
Sbjct:   41 SFASQIINFTFPHIGNVGANREDVEAKTLHALGCIVREDVTAPSNFRSLWRFDSWLKDHDRIGLAGVDTRALTGLLRKKGAQNAVIAHDPKGQFDIPALIETARSWAGLQGMDLARSVS 159          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MARMM (Carbamoyl-phosphate synthase small chain OS=Maricaulis maris (strain MCS10) GN=carA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR----QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSDQELLEMSRSW--DIVGIDLISDVSGKE 357
            SYAGQ V  T PH+GN G N +DEE+     +    G++ R+     ++WR   T   +L  R I+ ++ +DTRA+TR++R+ G  +  +        D E L+ + +    + G +L +DV+  E
Sbjct:   53 SYAGQVVCFTFPHVGNVGANGEDEEAASPQARKAAVGMIARAKITPPASWRADTTFEEWLCTRGIVALTGIDTRALTRKIREGGMQMCAIAHDAAGNIDIEALKAAAAGAPTMEGRELAADVARTE 178          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACLA (Carbamoyl-phosphate synthase small chain OS=Lactococcus lactis subsp. lactis GN=carA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 35/100 (35.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEM 300
            SY GQ +  T P +GN GVN DD ES       +V+   +   SNWR   +   +L  +NI GI+ VDTRAIT+ +R+ G++   L     + + ++ ++
Sbjct:   46 SYNGQILTFTYPIVGNYGVNRDDYESIHPTCKAVVVHEAACRPSNWRMQMSFDEFLKAKNIPGITGVDTRAITKIVREHGTMKASLVQARDEVEHQMSQL 145          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_OCHA4 (Carbamoyl-phosphate synthase small chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=carA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEES-KSDQELLE-MSRSWD-IVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R  E L  +L  R ++ ++ +DTRA+T  +R+ G+   V++ + S K D E L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGTNAEDVEDLTPANRHGAVGAIFKADITSPSNFRATEDLDAWLKNRGVIALAGIDTRALTSLIRERGAQNAVIAHDPSGKFDLEALKARAAAWSGLENLDLAKDVT 182          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRR6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=carA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P +GN G+N DD ES      G+V+   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L+      D    ++  +  ++  D I  VS K
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLTHVGDSMDHVTDQLQAT--VLPTDNIKQVSTK 161          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_DEIRA3.973e-1239.08Carbamoyl-phosphate synthase small chain OS=Deinoc... [more]
CARA_CLOAB6.778e-1234.45Carbamoyl-phosphate synthase small chain OS=Clostr... [more]
CARA_LACLM1.156e-1136.00Carbamoyl-phosphate synthase small chain OS=Lactoc... [more]
CARA_DEIGD1.156e-1139.08Carbamoyl-phosphate synthase small chain OS=Deinoc... [more]
CARA_CAUCR1.156e-1132.52Carbamoyl-phosphate synthase small chain OS=Caulob... [more]
CARA_ZYMMO1.510e-1134.45Carbamoyl-phosphate synthase small chain OS=Zymomo... [more]
CARA_MARMM2.576e-1131.75Carbamoyl-phosphate synthase small chain OS=Marica... [more]
CARA_LACLA2.576e-1135.00Carbamoyl-phosphate synthase small chain OS=Lactoc... [more]
CARA_OCHA43.364e-1134.15Carbamoyl-phosphate synthase small chain OS=Ochrob... [more]
CARA_STRR64.393e-1134.75Carbamoyl-phosphate synthase small chain OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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