FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_YERPE (Carbamoyl-phosphate synthase small chain OS=Yersinia pestis GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18 Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES GLVIR L + SN+R E L YL NI+ I+D+DTR +TR LR+ G+ G + E LE ++++ + G+DL +V+ KE Sbjct: 47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHOBA (Carbamoyl-phosphate synthase small chain OS=Rhodopirellula baltica GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18 Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDV 345 SY GQ V MT P +GN G+N D E+R LAG +IR+ S SN+R +L +YL + ++GI+ +DTRA+ RR+R +G++ GVLST + + + S +VG DL+ +V Sbjct: 51 SYRGQLVTMTYPEMGNYGINSIDLENRGTSLAGFIIRNESRMHSNYRSEGSLSDYLNSQGVVGIAGIDTRALVRRIRSEGAMRGVLSTTDLDDASLVAKAKASPGLVGRDLVQEV 165
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECOLI (Carbamoyl-phosphate synthase small chain OS=Escherichia coli (strain K12) GN=carA PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18 Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ E Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECO57 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O157:H7 GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18 Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ E Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRAW (Carbamoyl-phosphate synthase small chain OS=Streptomyces avermitilis GN=carA PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18 Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGKE 357 SY Q V+MT PH+GNTGVN +D ES++ +++G V+R + SNWR +L L + ++GIS +DTRA+TR LR+ G++ +G+ S + +L E+ ++ ++ G +L ++V+ KE Sbjct: 55 SYHRQVVVMTAPHVGNTGVNDEDPESKRIWVSGYVVRDPARVPSNWRSRRSLDEELRHQGVVGISGIDTRALTRHLRESGAMRVGIFSGSALPDEGTMLAEVRQAPEMKGANLAAEVATKE 175
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THISH (Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=carA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18 Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTGVN +DEES AGLVIR L S+WR E+L +YL ++ I+++DTR +TR LR+ G+ G + E +Q L +R + + G+DL +VS E Sbjct: 48 SYARQIVTLTYPHIGNTGVNPEDEESAGVHAAGLVIRDLPPLVSSWRSRESLPDYLTRFGVVAIANIDTRRLTRILREKGAQNGCIMAGEI-DEQAALAAARGFPGLKGMDLAKEVSTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PHOPR (Carbamoyl-phosphate synthase small chain OS=Photobacterium profundum GN=carA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18 Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R +L +YL +NI+GI+++DTR +TR LR+ G+ G + ++ + L+ ++ + + G+DL V+ E Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESNSIHAQGLVIRDLPLLASNFRNERSLSDYLKSQNIVGIAEIDTRKLTRILREKGAQNGCIMAGDNLDEALALDKAKEFPGLKGMDLAKVVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ERWCT (Carbamoyl-phosphate synthase small chain OS=Erwinia carotovora subsp. atroseptica GN=carA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18 Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N +DEES GLVIR L + SN+R E+L YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE ++++ + G+DL +V+ E Sbjct: 47 SYSRQIVTLTYPHIGNVGANANDEESPSVQAQGLVIRDLPLIASNYRSEESLSEYLKRNNIVAIADIDTRKLTRLLREKGAQNGCIIAGDAPDAVVALEKAKAFPGLKGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CAMJE (Carbamoyl-phosphate synthase small chain OS=Campylobacter jejuni GN=carA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18 Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SYAGQF++ + P IG G N +D ES++ F +G+++R LS SN+R E+L +YL + +GI ++DTR + + +R +G+L V+STE S + + + +S I ++ + +VS K+ Sbjct: 45 SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEKHGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVSTKK 163
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PASMU (Carbamoyl-phosphate synthase small chain OS=Pasteurella multocida GN=carA PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.329e-18 Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY Q V +T PHIGNTG N +D E+ + +GL+IR L + SN+R + +L +YL N++ I+D+DTR +TR LR G+ G + T E + + LE+++S+ + G DL +VS E Sbjct: 47 SYFRQIVTLTYPHIGNTGTNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRDKGAQAGCIMTGEI-DEAKALELAKSFGSMAGKDLAQEVSTGE 165 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |