FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVM (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=carA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.266e-18
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIV-GIDLISDVSGKEP 360
            SYAGQ V MT P IGN GV  +D ES +  +   +++      SNWR   +L +YLA+  +MGI  +DTRA+TR LR +G++ G++STE    D EL+  +R+   + G +L++ V+   P
Sbjct:   45 SYAGQMVCMTYPLIGNYGVTAEDMESGKVHVEAFIVKECCRTPSNWRAIMSLPDYLAQHGVMGIEGIDTRALTRHLRINGAMRGIISTETDDRD-ELVRRARALPTMEGQNLVTRVAPATP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PROA2 (Carbamoyl-phosphate synthase small chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=carA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17
Identity = 46/119 (38.66%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST---EESKSDQELLEMSRSWDIVGIDLISDVS 348
            SYAGQ V+MT P IGN GVN  D ES++ + + L++R +S   SN+    +L  YL E  +MG++ +DTR + R +RQ G++ GV+S    +E + +++ L++    ++ G+DL+  VS
Sbjct:   48 SYAGQMVVMTYPLIGNYGVNQSDAESQKIWASALIVREMSNIHSNFAATGSLDQYLKEAKVMGLAGIDTRKLVREIRQKGAMRGVISAIDPDEKRLEEKALKIP---EMTGLDLVKKVS 163          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THEMA (Carbamoyl-phosphate synthase small chain OS=Thermotoga maritima GN=carA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SY GQ V+MT P IG  GVN +D ES    +AG V+       SNWR   +  +YL + NI+ I  VDTRA+TR++R  G++ G +ST +   D  +  +  S  IVG DL   VS KE
Sbjct:   47 SYTGQIVVMTYPEIGIYGVNDEDVESDGIKVAGFVVYRSVDTPSNWRATMSFPDYLKKYNIVAIEGVDTRALTRKIRVKGAMKGAISTVDLDPDSLVKRVKESPSIVGRDLAGLVSPKE 165          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESMR (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=carA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.102e-17
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEES 273
            SY GQ V MT PH+GN G+N +D ES    +AG +++      SNWR   TL  YL  + I GI  +DTRA+TR LR  G++ G +ST+ S
Sbjct:   45 SYTGQMVCMTYPHVGNYGINPEDIESAHIRVAGFIVKECCKEPSNWRSTMTLPEYLTSQGITGIEGIDTRALTRHLRLHGAMRGYISTDVS 135          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XYLFA (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa GN=carA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG    D+E+ + + AGL++R +    SNWR   +L ++LA R ++ I+ +DTR +TR LR+ G+  G L   E   D+      +   I G+DL   VS K+
Sbjct:   47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVDRAQDAARQFTGIKGMDLAKVVSTKQ 165          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LAWIP (Carbamoyl-phosphate synthase small chain OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=carA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V MT P IGN G+N +D ES +  ++ L+++      SNWR   +L  +L E NI GI  +DTRA+TR +R +G++ G++ST  +  +  +L + +   + G + ++ V+   P
Sbjct:   45 SYYGQMVCMTWPLIGNYGINKEDMESEKIHVSALIVKECCRNPSNWRSETSLPKFLQEYNIAGIEGIDTRALTRHIRINGAMRGIISTSITDPNDLILRVKKVPSMEGQNYVTKVAPNSP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ACIAD (Carbamoyl-phosphate synthase small chain OS=Acinetobacter sp. (strain ADP1) GN=carA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEES---RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD 342
            SYA Q V +T PHIGNTG N +D ES    + +  GL+IR L +  SN+R  ++L  YL + N++ I+D+DTR +TR LR  G+  G +   E+ +++E L  +R++  + G+DL  +
Sbjct:   47 SYAQQLVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNVVAIADIDTRKLTRILRDKGAQNGCILAGENITEEEALAKARAFGGLNGLDLAKE 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SHEON (Carbamoyl-phosphate synthase small chain OS=Shewanella oneidensis GN=carA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 44/117 (37.61%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348
            SY+ Q V +T PHIGNTG N +D ES      GL+IR L +  S++R  + L +YL   N++GI+D+DTR +TR LR+ G+  G +       + + L  ++++  + G+DL  +V+
Sbjct:   51 SYSRQIVTLTYPHIGNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVT 167          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_OCEIH (Carbamoyl-phosphate synthase small chain OS=Oceanobacillus iheyensis GN=carA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR 306
            SY GQFV +T P IGN G+N DD E+   F+ GLV++  S   SN+R  ETL  +L   NI GI+++DTR +TR +R+ G++  V+  +E K++Q ++E  R
Sbjct:   46 SYCGQFVTLTYPLIGNYGINRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKHGTMRAVM-VDEQKNEQHVIEQLR 146          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESAD (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=carA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ V MT P IGN G+  +D ES +  +A  +++      SNWR   +L  YL E  +MGI  +DTRA+TR LR +G++ G++STEE   ++ + +  +   + G +L   V+ +
Sbjct:   45 SYTGQMVCMTYPLIGNYGITKEDIESAKVHVAAFIVKECCKHPSNWRSVMSLPEYLKEAGVMGIEGIDTRALTRHLRINGAMRGIISTEELDPEKLVAKAKQLPTMEGQNLADTVTSE 162          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_DESVM8.266e-1840.50Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_PROA21.410e-1738.66Carbamoyl-phosphate synthase small chain OS=Prosth... [more]
CARA_THEMA2.405e-1742.86Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_DESMR4.102e-1746.15Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_XYLFA5.358e-1739.50Carbamoyl-phosphate synthase small chain OS=Xylell... [more]
CARA_LAWIP5.358e-1735.83Carbamoyl-phosphate synthase small chain OS=Lawson... [more]
CARA_ACIAD5.358e-1739.83Carbamoyl-phosphate synthase small chain OS=Acinet... [more]
CARA_SHEON9.139e-1737.61Carbamoyl-phosphate synthase small chain OS=Shewan... [more]
CARA_OCEIH9.139e-1744.12Carbamoyl-phosphate synthase small chain OS=Oceano... [more]
CARA_DESAD9.139e-1737.29Carbamoyl-phosphate synthase small chain OS=Desulf... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
back to top