FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVM (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=carA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.266e-18 Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIV-GIDLISDVSGKEP 360 SYAGQ V MT P IGN GV +D ES + + +++ SNWR +L +YLA+ +MGI +DTRA+TR LR +G++ G++STE D EL+ +R+ + G +L++ V+ P Sbjct: 45 SYAGQMVCMTYPLIGNYGVTAEDMESGKVHVEAFIVKECCRTPSNWRAIMSLPDYLAQHGVMGIEGIDTRALTRHLRINGAMRGIISTETDDRD-ELVRRARALPTMEGQNLVTRVAPATP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PROA2 (Carbamoyl-phosphate synthase small chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=carA PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.410e-17 Identity = 46/119 (38.66%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST---EESKSDQELLEMSRSWDIVGIDLISDVS 348 SYAGQ V+MT P IGN GVN D ES++ + + L++R +S SN+ +L YL E +MG++ +DTR + R +RQ G++ GV+S +E + +++ L++ ++ G+DL+ VS Sbjct: 48 SYAGQMVVMTYPLIGNYGVNQSDAESQKIWASALIVREMSNIHSNFAATGSLDQYLKEAKVMGLAGIDTRKLVREIRQKGAMRGVISAIDPDEKRLEEKALKIP---EMTGLDLVKKVS 163
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THEMA (Carbamoyl-phosphate synthase small chain OS=Thermotoga maritima GN=carA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17 Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SY GQ V+MT P IG GVN +D ES +AG V+ SNWR + +YL + NI+ I VDTRA+TR++R G++ G +ST + D + + S IVG DL VS KE Sbjct: 47 SYTGQIVVMTYPEIGIYGVNDEDVESDGIKVAGFVVYRSVDTPSNWRATMSFPDYLKKYNIVAIEGVDTRALTRKIRVKGAMKGAISTVDLDPDSLVKRVKESPSIVGRDLAGLVSPKE 165
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESMR (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=carA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.102e-17 Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEES 273 SY GQ V MT PH+GN G+N +D ES +AG +++ SNWR TL YL + I GI +DTRA+TR LR G++ G +ST+ S Sbjct: 45 SYTGQMVCMTYPHVGNYGINPEDIESAHIRVAGFIVKECCKEPSNWRSTMTLPEYLTSQGITGIEGIDTRALTRHLRLHGAMRGYISTDVS 135
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XYLFA (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa GN=carA PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG D+E+ + + AGL++R + SNWR +L ++LA R ++ I+ +DTR +TR LR+ G+ G L E D+ + I G+DL VS K+ Sbjct: 47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVDRAQDAARQFTGIKGMDLAKVVSTKQ 165
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LAWIP (Carbamoyl-phosphate synthase small chain OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=carA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17 Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V MT P IGN G+N +D ES + ++ L+++ SNWR +L +L E NI GI +DTRA+TR +R +G++ G++ST + + +L + + + G + ++ V+ P Sbjct: 45 SYYGQMVCMTWPLIGNYGINKEDMESEKIHVSALIVKECCRNPSNWRSETSLPKFLQEYNIAGIEGIDTRALTRHIRINGAMRGIISTSITDPNDLILRVKKVPSMEGQNYVTKVAPNSP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ACIAD (Carbamoyl-phosphate synthase small chain OS=Acinetobacter sp. (strain ADP1) GN=carA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17 Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEES---RQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISD 342 SYA Q V +T PHIGNTG N +D ES + + GL+IR L + SN+R ++L YL + N++ I+D+DTR +TR LR G+ G + E+ +++E L +R++ + G+DL + Sbjct: 47 SYAQQLVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNVVAIADIDTRKLTRILRDKGAQNGCILAGENITEEEALAKARAFGGLNGLDLAKE 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SHEON (Carbamoyl-phosphate synthase small chain OS=Shewanella oneidensis GN=carA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17 Identity = 44/117 (37.61%), Postives = 71/117 (60.68%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVS 348 SY+ Q V +T PHIGNTG N +D ES GL+IR L + S++R + L +YL N++GI+D+DTR +TR LR+ G+ G + + + L ++++ + G+DL +V+ Sbjct: 51 SYSRQIVTLTYPHIGNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVT 167
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_OCEIH (Carbamoyl-phosphate synthase small chain OS=Oceanobacillus iheyensis GN=carA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17 Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR 306 SY GQFV +T P IGN G+N DD E+ F+ GLV++ S SN+R ETL +L NI GI+++DTR +TR +R+ G++ V+ +E K++Q ++E R Sbjct: 46 SYCGQFVTLTYPLIGNYGINRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKHGTMRAVM-VDEQKNEQHVIEQLR 146
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESAD (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=carA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17 Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ V MT P IGN G+ +D ES + +A +++ SNWR +L YL E +MGI +DTRA+TR LR +G++ G++STEE ++ + + + + G +L V+ + Sbjct: 45 SYTGQMVCMTYPLIGNYGITKEDIESAKVHVAAFIVKECCKHPSNWRSVMSLPEYLKEAGVMGIEGIDTRALTRHLRINGAMRGIISTEELDPEKLVAKAKQLPTMEGQNLADTVTSE 162 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |