FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_COREF (Carbamoyl-phosphate synthase small chain OS=Corynebacterium efficiens GN=carA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQ--CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SY  Q V+ T P IGNTG N +D ES     ++AGLVIR L++  SNWR   TL   +A++ ++GI  +DTRA+ R +R +G++  G+ S  +  +  +EL+E+ +S   +VG +L  +VS  +P
Sbjct:   66 SYHRQIVVATAPQIGNTGWNEEDNESHDGSIWVAGLVIRDLAVRVSNWRATTTLQEEMAKQGVVGIGGIDTRALVRHIRNEGAVPAGIFSGADAERPIEELVEIVKSQPSMVGANLAVEVSVDKP 190          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XANAC (Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis pv. citri GN=carA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SYA Q V +T PHIGNTG    D+E+R+ + AGL++R +    SNWR    L  +L  R ++ IS +DTR +TR LRQ G+  G L   +   ++ L    +   + G+DL   VS
Sbjct:   47 SYARQMVTLTYPHIGNTGFTDQDDEARKIWAAGLIVRDVPRRPSNWRSQVALPEWLQARGVVAISGIDTRKLTRLLRQKGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVS 162          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_POLSQ (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=carA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGKEP 360
            SY  Q V +T PHIGN GVN  D ES +   AGLVI+ L    SN+R    L  YL E  ++GI+ +DTR +TR LR  G+  G +   ++  D E      LE+ +++  + G+DL   V+ K+P
Sbjct:   53 SYCSQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVIKDLPKRVSNFRSEAPLDAYLTEAGVVGIAGIDTRKLTRILRDKGAQSGAIVAGKAGDDYETLGKKALELVKAFPGMAGLDLAKVVTTKKP 178          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XANCP (Carbamoyl-phosphate synthase small chain OS=Xanthomonas campestris pv. campestris GN=carA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.036e-16
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SYA Q V +T PHIGNTG N  D+E++Q + AGL++R +    S+WR    L  +L  R ++ IS +DTR +TR LR+ G+  G L   E   ++ L    +   + G+DL   VS
Sbjct:   47 SYARQMVTLTYPHIGNTGFNDQDDEAKQVWAAGLIVRDVPRRPSSWRNQVALPAWLQTRGVVAISGIDTRKLTRLLREKGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKVVS 162          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HYPNA (Carbamoyl-phosphate synthase small chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=carA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.659e-16
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSD-QELLEMSRSWD-IVGIDLISDVSGKEP 360
            SYA Q VL T PHIGN G N +D E      A    G + R      SNWR  E  G +LA R I+G+S +DTRA+T+R+R+ G     +    + K D   L+E++RSW+ + G DL   V    P
Sbjct:   48 SYASQLVLFTFPHIGNVGANAEDHEESTVEAADAARGAIFREPITAPSNWRSTEDFGVWLARRGIIGLSGIDTRALTKRIREKGMPKAAICHKPDGKIDFDALVELARSWNGLDGADLADVVDQDAP 174          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RALSO (Carbamoyl-phosphate synthase small chain OS=Ralstonia solanacearum GN=carA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SY+ Q V +T PHIGN GVN +D E+ +   AGL+I+ L I  SN+R   +L +YL    ++ I+ +DTR +TR LR+ G+  G VL+ E+  + Q+ ++++RS+  + G+DL   VS  +P
Sbjct:   50 SYSRQIVTLTYPHIGNVGVNREDVEATKVHAAGLIIKDLPILASNFRQEHSLSHYLKGEKVVAIAGIDTRKLTRILREKGAQNGCVLAGED--NPQKAIDLARSFPGLSGMDLAKVVSVTQP 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELHP (Carbamoyl-phosphate synthase small chain OS=Helicobacter hepaticus GN=carA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY+GQF++ + P IG  GVN  D ES +    G+++ S +   SN+R  ++L  YL E NIMGI  VDTR + + L   G+++ + ST+ ++  +    +SR+  I  I+ I +VS K
Sbjct:   49 SYSGQFIVFSMPEIGIVGVNNQDSESPRAACTGVILSSYNDFVSNFRSEQSLSTYLKEHNIMGICGVDTRNLIKMLTTQGAMMMIASTQITQESELKASLSRTPPIQDINFIKEVSTK 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XYLFT (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG    D+E+ + + AGL++R +    SNWR   +L ++LA R ++ I+ +DTR +TR LR+ G+  G L   E    +      +   I G+DL   VS K+
Sbjct:   47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQ 165          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVV (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SYAGQ V MT P +GN GV  +D ES +  +   +++      SNWR   +L +YL    +MGI  +DTRA+TR LR  G++ GV+ST+E+     L+E +R+   + G +L++ V+   P
Sbjct:   45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVH (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=carA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360
            SYAGQ V MT P +GN GV  +D ES +  +   +++      SNWR   +L +YL    +MGI  +DTRA+TR LR  G++ GV+ST+E+     L+E +R+   + G +L++ V+   P
Sbjct:   45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAP 164          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_COREF9.139e-1740.00Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_XANAC1.194e-1639.66Carbamoyl-phosphate synthase small chain OS=Xantho... [more]
CARA_POLSQ1.194e-1639.68Carbamoyl-phosphate synthase small chain OS=Polynu... [more]
CARA_XANCP2.036e-1639.66Carbamoyl-phosphate synthase small chain OS=Xantho... [more]
CARA_HYPNA2.659e-1640.16Carbamoyl-phosphate synthase small chain OS=Hyphom... [more]
CARA_RALSO3.473e-1640.16Carbamoyl-phosphate synthase small chain OS=Ralsto... [more]
CARA_HELHP3.473e-1637.29Carbamoyl-phosphate synthase small chain OS=Helico... [more]
CARA_XYLFT4.536e-1638.66Carbamoyl-phosphate synthase small chain OS=Xylell... [more]
CARA_DESVV4.536e-1638.84Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_DESVH4.536e-1638.84Carbamoyl-phosphate synthase small chain OS=Desulf... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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