FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_COREF (Carbamoyl-phosphate synthase small chain OS=Corynebacterium efficiens GN=carA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.139e-17 Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQ--CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SY Q V+ T P IGNTG N +D ES ++AGLVIR L++ SNWR TL +A++ ++GI +DTRA+ R +R +G++ G+ S + + +EL+E+ +S +VG +L +VS +P Sbjct: 66 SYHRQIVVATAPQIGNTGWNEEDNESHDGSIWVAGLVIRDLAVRVSNWRATTTLQEEMAKQGVVGIGGIDTRALVRHIRNEGAVPAGIFSGADAERPIEELVEIVKSQPSMVGANLAVEVSVDKP 190
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XANAC (Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis pv. citri GN=carA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16 Identity = 46/116 (39.66%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SYA Q V +T PHIGNTG D+E+R+ + AGL++R + SNWR L +L R ++ IS +DTR +TR LRQ G+ G L + ++ L + + G+DL VS Sbjct: 47 SYARQMVTLTYPHIGNTGFTDQDDEARKIWAAGLIVRDVPRRPSNWRSQVALPEWLQARGVVAISGIDTRKLTRLLRQKGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVS 162
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_POLSQ (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=carA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16 Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGKEP 360 SY Q V +T PHIGN GVN D ES + AGLVI+ L SN+R L YL E ++GI+ +DTR +TR LR G+ G + ++ D E LE+ +++ + G+DL V+ K+P Sbjct: 53 SYCSQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVIKDLPKRVSNFRSEAPLDAYLTEAGVVGIAGIDTRKLTRILRDKGAQSGAIVAGKAGDDYETLGKKALELVKAFPGMAGLDLAKVVTTKKP 178
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XANCP (Carbamoyl-phosphate synthase small chain OS=Xanthomonas campestris pv. campestris GN=carA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.036e-16 Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SYA Q V +T PHIGNTG N D+E++Q + AGL++R + S+WR L +L R ++ IS +DTR +TR LR+ G+ G L E ++ L + + G+DL VS Sbjct: 47 SYARQMVTLTYPHIGNTGFNDQDDEAKQVWAAGLIVRDVPRRPSSWRNQVALPAWLQTRGVVAISGIDTRKLTRLLREKGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKVVS 162
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HYPNA (Carbamoyl-phosphate synthase small chain OS=Hyphomonas neptunium (strain ATCC 15444) GN=carA PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.659e-16 Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDG-SLIGVLSTEESKSD-QELLEMSRSWD-IVGIDLISDVSGKEP 360 SYA Q VL T PHIGN G N +D E A G + R SNWR E G +LA R I+G+S +DTRA+T+R+R+ G + + K D L+E++RSW+ + G DL V P Sbjct: 48 SYASQLVLFTFPHIGNVGANAEDHEESTVEAADAARGAIFREPITAPSNWRSTEDFGVWLARRGIIGLSGIDTRALTKRIREKGMPKAAICHKPDGKIDFDALVELARSWNGLDGADLADVVDQDAP 174
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RALSO (Carbamoyl-phosphate synthase small chain OS=Ralstonia solanacearum GN=carA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16 Identity = 49/122 (40.16%), Postives = 78/122 (63.93%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SY+ Q V +T PHIGN GVN +D E+ + AGL+I+ L I SN+R +L +YL ++ I+ +DTR +TR LR+ G+ G VL+ E+ + Q+ ++++RS+ + G+DL VS +P Sbjct: 50 SYSRQIVTLTYPHIGNVGVNREDVEATKVHAAGLIIKDLPILASNFRQEHSLSHYLKGEKVVAIAGIDTRKLTRILREKGAQNGCVLAGED--NPQKAIDLARSFPGLSGMDLAKVVSVTQP 169
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELHP (Carbamoyl-phosphate synthase small chain OS=Helicobacter hepaticus GN=carA PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16 Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY+GQF++ + P IG GVN D ES + G+++ S + SN+R ++L YL E NIMGI VDTR + + L G+++ + ST+ ++ + +SR+ I I+ I +VS K Sbjct: 49 SYSGQFIVFSMPEIGIVGVNNQDSESPRAACTGVILSSYNDFVSNFRSEQSLSTYLKEHNIMGICGVDTRNLIKMLTTQGAMMMIASTQITQESELKASLSRTPPIQDINFIKEVSTK 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_XYLFT (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16 Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG D+E+ + + AGL++R + SNWR +L ++LA R ++ I+ +DTR +TR LR+ G+ G L E + + I G+DL VS K+ Sbjct: 47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVGKAQDAAHQFAGIKGMDLAKVVSTKQ 165
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVV (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SYAGQ V MT P +GN GV +D ES + + +++ SNWR +L +YL +MGI +DTRA+TR LR G++ GV+ST+E+ L+E +R+ + G +L++ V+ P Sbjct: 45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_DESVH (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=carA PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16 Identity = 47/121 (38.84%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKEP 360 SYAGQ V MT P +GN GV +D ES + + +++ SNWR +L +YL +MGI +DTRA+TR LR G++ GV+ST+E+ L+E +R+ + G +L++ V+ P Sbjct: 45 SYAGQMVCMTYPLVGNYGVTREDMESGKVHVEAFIVKECCKVPSNWRSEISLPDYLKRHGVMGIEGIDTRALTRHLRIHGAMRGVISTQET-DPARLVERARALPSMEGQNLVTRVAPAAP 164 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |