FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACSU (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus subtilis GN=pyrAA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.536e-16
Identity = 43/103 (41.75%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ V +T P IGN G+N DD ES   F+ GL+I+ L    SNWR A TL  YL  +NI G+  +DTR +TR +R  G+L G  ++ +   +  L  ++ +
Sbjct:   45 SYCGQIVTLTYPLIGNYGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMIRTAGALKGTFASSDEDIEAVLKRLNET 147          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CORGL (Carbamoyl-phosphate synthase small chain OS=Corynebacterium glutamicum GN=carA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.924e-16
Identity = 51/124 (41.13%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSWD-IVGIDLISDVSGKE 357
            SY  Q V+ T P IGNTG N +D ESR  + ++AGLVIR L+   SNWR   +L   +A + I+GI  +DTRA+ R LR +GS+  G+ S  +  +  +EL+E+ ++   + G +L  +VS  E
Sbjct:   61 SYHRQIVVATAPQIGNTGWNDEDNESRDGKIWVAGLVIRDLAARVSNWRATTSLQQEMAGQGIVGIGGIDTRALVRHLRNEGSIAAGIFSGADAQRPVEELVEIVKNQPAMTGANLSVEVSADE 184          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LISMO (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes GN=carA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 47/116 (40.52%), Postives = 71/116 (61.21%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+L+  E+   +ELL   RS  +  +D + +VS
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFASNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETADKEELLHHLRSVRL-PVDQVHEVS 159          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BIFLO (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum GN=carA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.737e-16
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVSGKE 357
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + LA+  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE +  +  + G+ L  +VS KE
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVSTKE 189          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SILPO (Carbamoyl-phosphate synthase small chain OS=Silicibacter pomeroyi GN=carA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGS-LIGVLSTEESKSD-QELLEMSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN GV  +D+E+     AG+V++      SNWR AE L  +LA R  + I  VDTR +TR +RQ G+  + +    E K D   L+  +R +  + G+DL  DV+
Sbjct:   53 SYAGQIVTFTFPHIGNVGVTPEDDETTDPVAAGMVVKWDPTAASNWRAAEELKGWLARRGRIAIGGVDTRRLTRAIRQQGAPHVALAHDPEGKFDLAALIAAARGFAGLEGMDLAKDVT 171          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LISMF (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=carA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+L+  E+ + +ELL   RS  +  +D + +VS
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETANKEELLHHLRSVRL-PVDQVHEVS 159          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_AKKM8 (Carbamoyl-phosphate synthase small chain OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=carA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.010e-15
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY+GQ V MT P IGN GVN +D ES +  ++G V+  L+   SNWR  E+LG +L ++ ++GI  VDTR I + LR  G++   L+TE   + +E +E +R+
Sbjct:   45 SYSGQIVTMTYPLIGNYGVNPEDGESGKAQVSGFVVAELAKVHSNWRATESLGPWLEKQGVIGIEGVDTRKIAKHLRSAGAMRACLTTE--LTPEEAVEAARN 145          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCTU (Carbamoyl-phosphate synthase small chain OS=Mycobacterium tuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGKEP 360
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   TL + L  + I+GI+ +DTRA+ R LR  GS+  GV S        +L+   R+   ++G DL  +VS  EP
Sbjct:   46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRAVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEP 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BIFLI (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=carA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.724e-15
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + L +  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE  R+   + G+ L  +VS KE
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLTKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVRNTPQMQGLSLYDEVSTKE 189          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LISIN (Carbamoyl-phosphate synthase small chain OS=Listeria innocua GN=carA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.251e-15
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+LS   +   +ELL   RS  +  +D + +VS
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEYPSNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILSA-ATADKEELLHHLRSVRL-PVDQVHEVS 159          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_BACSU4.536e-1641.75Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_CORGL5.924e-1641.13Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_LISMO7.737e-1640.52Carbamoyl-phosphate synthase small chain OS=Lister... [more]
CARA_BIFLO7.737e-1638.76Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_SILPO1.010e-1541.18Carbamoyl-phosphate synthase small chain OS=Silici... [more]
CARA_LISMF1.010e-1540.52Carbamoyl-phosphate synthase small chain OS=Lister... [more]
CARA_AKKM81.010e-1542.72Carbamoyl-phosphate synthase small chain OS=Akkerm... [more]
CARA_MYCTU1.724e-1541.13Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_BIFLI1.724e-1538.76Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_LISIN2.251e-1540.52Carbamoyl-phosphate synthase small chain OS=Lister... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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