FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BIFLD (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum (strain DJO10A) GN=carA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.940e-15
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVSGK 354
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + LA+  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE +  +  + G+ L  +VS K
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVSTK 188          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCBP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=carA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWD--IVGIDLISDVSGKE 357
            SY+ Q +  T PHIGN G+N +D ES      GL++R +S   SN R   +L NYL  + I+ IS++DTR +TR LR  GS  G ++T++  S   +L+     D  I   DL+  VS K+
Sbjct:   57 SYSNQIITFTYPHIGNVGINKNDCESNVIHAKGLIVRDISSIYSNHRSQMSLLNYLLNQKIIVISNIDTRKLTRILRTTGSQYGYITTKKIHSIINVLKHINILDNPITNKDLVKQVSTKK 177          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCBO (Carbamoyl-phosphate synthase small chain OS=Mycobacterium bovis GN=carA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGKEP 360
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   TL + L  + I+GI+ +DTR + R LR  GS+  GV S        +L+   R+   ++G DL  +VS  EP
Sbjct:   46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRGVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEP 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNR3 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain RCC307) GN=carA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ +  T P +GNTGVN +D E+    +  ++ R L+   SNWR + TL  +L +  ++G+  +DTRA+ R+LR  G++ G +ST+ +   + L ++  +  + G +L   VS
Sbjct:   45 SYTGQLITFTYPELGNTGVNQEDLEADTPAVKAVLCRCLAPQPSNWRSSGTLEQWLEQHGVVGLKGIDTRAVVRQLRDGGAINGAVSTDGTSPAELLKQVLAAPSMAGQNLAERVS 160          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CLOPE (Carbamoyl-phosphate synthase small chain OS=Clostridium perfringens GN=carA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSD--QELLEMSRSWDIVGI 327
            SY GQ V MT P IGN G+N +D ES++  + G ++R      +N+RC   L  YLA+  ++G+  +DTRA+T+ LR +G++ G++  + S  +  ++ LE   + D V I
Sbjct:   45 SYYGQIVTMTYPLIGNYGINLEDLESKEPKVRGFIVREKCQYPNNFRCELELETYLAQNKVLGLDGIDTRALTKILRNNGTMKGIIVLDNSNLEDVKDKLEAFSNRDAVSI 155          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus caldolyticus GN=pyrAA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL 258
            SY GQ V MT P IGN G+N DD E+ +  + G +++   +  SNWR   TL  YL E+ I G+S +DTR +TR +RQ G+L G++
Sbjct:   45 SYCGQIVTMTYPLIGNYGINRDDFEAIRPHVHGFIVKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLIRQYGTLKGMI 130          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_GRATL (Carbamoyl-phosphate synthase small chain OS=Gracilaria tenuistipitata var. liui GN=carA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267
            SYA Q +  T P IGNTG+N +D ES +  + G++ +++    +NWR  E+  NY+    I  I  +DTRA+T+ LR+ GS+ G +S++
Sbjct:   50 SYAEQIITFTYPEIGNTGINHEDNESNKIHVKGIITKNICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNGCISSQ 138          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACHK (Carbamoyl-phosphate synthase small chain OS=Bacillus thuringiensis subsp. konkukian GN=carA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS K+P
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCR (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=carA PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS K+P
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICNHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACC1 (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 10987) GN=carA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS K+P
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_BIFLD2.940e-1538.28Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_BUCBP3.840e-1539.67Carbamoyl-phosphate synthase small chain OS=Buchne... [more]
CARA_MYCBO5.015e-1540.32Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_SYNR36.550e-1534.48Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_CLOPE6.550e-1536.94Carbamoyl-phosphate synthase small chain OS=Clostr... [more]
CARA_BACCL6.550e-1545.35Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_GRATL8.554e-1539.33Carbamoyl-phosphate synthase small chain OS=Gracil... [more]
CARA_BACHK8.554e-1538.33Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_BACCR8.554e-1538.33Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_BACC18.554e-1538.33Carbamoyl-phosphate synthase small chain OS=Bacill... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
back to top