FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BIFLD (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum (strain DJO10A) GN=carA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.940e-15 Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVSGK 354 SY Q V+ T PHIG+TGVN +D ES + ++AG ++R S SNWR +L + LA+ I+G+S +DTR + R LR G + G+ S T K+ ++LLE + + + G+ L +VS K Sbjct: 61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVSTK 188
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCBP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=carA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.840e-15 Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWD--IVGIDLISDVSGKE 357 SY+ Q + T PHIGN G+N +D ES GL++R +S SN R +L NYL + I+ IS++DTR +TR LR GS G ++T++ S +L+ D I DL+ VS K+ Sbjct: 57 SYSNQIITFTYPHIGNVGINKNDCESNVIHAKGLIVRDISSIYSNHRSQMSLLNYLLNQKIIVISNIDTRKLTRILRTTGSQYGYITTKKIHSIINVLKHINILDNPITNKDLVKQVSTKK 177
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCBO (Carbamoyl-phosphate synthase small chain OS=Mycobacterium bovis GN=carA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15 Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGKEP 360 SY Q V+ T P IGNTG N +D ESR + ++AG +R S SNWR TL + L + I+GI+ +DTR + R LR GS+ GV S +L+ R+ ++G DL +VS EP Sbjct: 46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRGVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEP 169
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYNR3 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain RCC307) GN=carA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15 Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY GQ + T P +GNTGVN +D E+ + ++ R L+ SNWR + TL +L + ++G+ +DTRA+ R+LR G++ G +ST+ + + L ++ + + G +L VS Sbjct: 45 SYTGQLITFTYPELGNTGVNQEDLEADTPAVKAVLCRCLAPQPSNWRSSGTLEQWLEQHGVVGLKGIDTRAVVRQLRDGGAINGAVSTDGTSPAELLKQVLAAPSMAGQNLAERVS 160
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CLOPE (Carbamoyl-phosphate synthase small chain OS=Clostridium perfringens GN=carA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15 Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSD--QELLEMSRSWDIVGI 327 SY GQ V MT P IGN G+N +D ES++ + G ++R +N+RC L YLA+ ++G+ +DTRA+T+ LR +G++ G++ + S + ++ LE + D V I Sbjct: 45 SYYGQIVTMTYPLIGNYGINLEDLESKEPKVRGFIVREKCQYPNNFRCELELETYLAQNKVLGLDGIDTRALTKILRNNGTMKGIIVLDNSNLEDVKDKLEAFSNRDAVSI 155
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus caldolyticus GN=pyrAA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15 Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL 258 SY GQ V MT P IGN G+N DD E+ + + G +++ + SNWR TL YL E+ I G+S +DTR +TR +RQ G+L G++ Sbjct: 45 SYCGQIVTMTYPLIGNYGINRDDFEAIRPHVHGFIVKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLIRQYGTLKGMI 130
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_GRATL (Carbamoyl-phosphate synthase small chain OS=Gracilaria tenuistipitata var. liui GN=carA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15 Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTE 267 SYA Q + T P IGNTG+N +D ES + + G++ +++ +NWR E+ NY+ I I +DTRA+T+ LR+ GS+ G +S++ Sbjct: 50 SYAEQIITFTYPEIGNTGINHEDNESNKIHVKGIITKNICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNGCISSQ 138
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACHK (Carbamoyl-phosphate synthase small chain OS=Bacillus thuringiensis subsp. konkukian GN=carA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ERNI G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS K+P Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCR (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=carA PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ERNI G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS K+P Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICNHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACC1 (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 10987) GN=carA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ERNI G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS K+P Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |