FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACAN (Carbamoyl-phosphate synthase small chain OS=Bacillus anthracis GN=carA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15
Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS K+P
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCPA (Carbamoyl-phosphate synthase small chain OS=Mycobacterium paratuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSR-SWDIVGIDLISDVS 348
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   +L + L  + I+GI+ +DTRA+ R LR  GS+  GV S +      EL++  R    ++G DL  +VS
Sbjct:   47 SYHRQIVVATAPQIGNTGWNGEDAESRGDKIWVAGYAVRDPSPRVSNWRATGSLEDELIRQRIVGIARIDTRAVVRHLRTRGSMKAGVFSGDALADPDELVQRVRGQQSMLGADLAGEVS 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYMTH (Carbamoyl-phosphate synthase small chain OS=Symbiobacterium thermophilum GN=carA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST 264
            SY GQ V+MT P IGN GV   D ESRQ ++ GLV++ L    S+W+   +L +YLA   +  ++ +DTRA+TR LR  G++ GV++T
Sbjct:   39 SYYGQIVVMTYPLIGNYGVTAADGESRQPWIRGLVVKELCDRPSHWQAVGSLSDYLAGCGVPILAGLDTRALTRHLRSHGTMRGVIAT 126          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAEQ (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=carA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL   LA+ +I GIS VDTR+ITR++R  G L     T+   + QEL+E  ++ ++   D +  VS K P
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNHGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus halodurans GN=pyrAA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.489e-14
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V +T P IGN G+N DD ES    + GL+++      SNWR  E+L + L  + I G+S +DTR +TR +R  G+L G L   +   +Q + E+  +      D +S VS ++P
Sbjct:   45 SYCGQIVTLTYPLIGNYGINRDDFESMNPAIHGLIVKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLIRMHGTLKGQLCPLDVDVEQIVQELKAT--PTPTDQVSRVSTRDP 162          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAES (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 12228) GN=carA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL   LA+ +I GIS VDTR+ITR++R  G L     T+   + QEL+E  ++ ++   D +  VS K P
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNYGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTP 164          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_FUSNN (Carbamoyl-phosphate synthase small chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ V +T P IGN G+N DD ES +  + G+V++ +    SN+R  +TL   L +  I GI  +DTRA+TR+LR  G + G L + +   D+ + E+ ++  ++  + I  VS K
Sbjct:   46 SYNGQIVTLTYPLIGNYGINRDDFESMKPCIKGMVVKEVCATPSNFRSEKTLDEALKDFGIPGIYGIDTRALTRKLRSKGVVKGCLVSIDRNVDEVVAELKKT--VLPTNQIEQVSSK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THETN (Carbamoyl-phosphate synthase small chain OS=Thermoanaerobacter tengcongensis GN=carA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SYAGQ V+MT P IGN G+N  D +S +  + G V+R      SN++  E+L +YL   NI  +S +DTRA+T++LR++G++ G++    + + ++ +E  ++      +L+ +VS K+P
Sbjct:   45 SYAGQIVVMTYPLIGNYGINKYDFQSEKPHIRGFVVREYCDKPSNFQSEESLLSYLDNHNIPVLSGIDTRALTKKLRENGTMRGII----TYNPEDNIEFDQT------NLLEEVSTKKP 154          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCZ (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ZK / E33L) GN=carA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ER I G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS K+P
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERKIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METTH (Carbamoyl-phosphate synthase small chain OS=Methanobacterium thermoautotrophicum GN=carA PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMS-RSWDIVGIDLISDVSGKEP 360
            SY GQ ++ T P  GN GV  +  +S      GL++R +    S+    +TL  +L E  I GI+ VDTRA+T ++R  G++ G L+TEE   D ELLEM+ +  DI  IDL+  V  +EP
Sbjct:   47 SYRGQILMPTYPLQGNYGVTEEWYQSDGIKAEGLIVREMCPAPSHSLSEKTLPEFLEEYGIPGIAGVDTRALTIKIRDKGTMKGALATEEI-DDDELLEMAVKQPDITEIDLVDMVCVREP 166          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_BACAN8.554e-1538.33Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_MYCPA1.459e-1440.83Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_SYMTH1.906e-1445.45Carbamoyl-phosphate synthase small chain OS=Symbio... [more]
CARA_STAEQ1.906e-1441.67Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_BACHD2.489e-1437.50Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_STAES3.251e-1441.67Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_FUSNN3.251e-1437.29Carbamoyl-phosphate synthase small chain OS=Fusoba... [more]
CARA_THETN4.245e-1435.83Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_BACCZ4.245e-1437.50Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_METTH5.545e-1440.50Carbamoyl-phosphate synthase small chain OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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