FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACAN (Carbamoyl-phosphate synthase small chain OS=Bacillus anthracis GN=carA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 8.554e-15 Identity = 46/120 (38.33%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ERNI G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS K+P Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCPA (Carbamoyl-phosphate synthase small chain OS=Mycobacterium paratuberculosis GN=carA PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14 Identity = 49/120 (40.83%), Postives = 69/120 (57.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSR-SWDIVGIDLISDVS 348 SY Q V+ T P IGNTG N +D ESR + ++AG +R S SNWR +L + L + I+GI+ +DTRA+ R LR GS+ GV S + EL++ R ++G DL +VS Sbjct: 47 SYHRQIVVATAPQIGNTGWNGEDAESRGDKIWVAGYAVRDPSPRVSNWRATGSLEDELIRQRIVGIARIDTRAVVRHLRTRGSMKAGVFSGDALADPDELVQRVRGQQSMLGADLAGEVS 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SYMTH (Carbamoyl-phosphate synthase small chain OS=Symbiobacterium thermophilum GN=carA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14 Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST 264 SY GQ V+MT P IGN GV D ESRQ ++ GLV++ L S+W+ +L +YLA + ++ +DTRA+TR LR G++ GV++T Sbjct: 39 SYYGQIVVMTYPLIGNYGVTAADGESRQPWIRGLVVKELCDRPSHWQAVGSLSDYLAGCGVPILAGLDTRALTRHLRSHGTMRGVIAT 126
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAEQ (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=carA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.906e-14 Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ + T P IGN G+N DD ES L G+V++ S SN+R +TL LA+ +I GIS VDTR+ITR++R G L T+ + QEL+E ++ ++ D + VS K P Sbjct: 47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNHGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus halodurans GN=pyrAA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.489e-14 Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V +T P IGN G+N DD ES + GL+++ SNWR E+L + L + I G+S +DTR +TR +R G+L G L + +Q + E+ + D +S VS ++P Sbjct: 45 SYCGQIVTLTYPLIGNYGINRDDFESMNPAIHGLIVKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLIRMHGTLKGQLCPLDVDVEQIVQELKAT--PTPTDQVSRVSTRDP 162
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STAES (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 12228) GN=carA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14 Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ + T P IGN G+N DD ES L G+V++ S SN+R +TL LA+ +I GIS VDTR+ITR++R G L T+ + QEL+E ++ ++ D + VS K P Sbjct: 47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNYGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTP 164
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_FUSNN (Carbamoyl-phosphate synthase small chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carA PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 3.251e-14 Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ V +T P IGN G+N DD ES + + G+V++ + SN+R +TL L + I GI +DTRA+TR+LR G + G L + + D+ + E+ ++ ++ + I VS K Sbjct: 46 SYNGQIVTLTYPLIGNYGINRDDFESMKPCIKGMVVKEVCATPSNFRSEKTLDEALKDFGIPGIYGIDTRALTRKLRSKGVVKGCLVSIDRNVDEVVAELKKT--VLPTNQIEQVSSK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THETN (Carbamoyl-phosphate synthase small chain OS=Thermoanaerobacter tengcongensis GN=carA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14 Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SYAGQ V+MT P IGN G+N D +S + + G V+R SN++ E+L +YL NI +S +DTRA+T++LR++G++ G++ + + ++ +E ++ +L+ +VS K+P Sbjct: 45 SYAGQIVVMTYPLIGNYGINKYDFQSEKPHIRGFVVREYCDKPSNFQSEESLLSYLDNHNIPVLSGIDTRALTKKLRENGTMRGII----TYNPEDNIEFDQT------NLLEEVSTKKP 154
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BACCZ (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ZK / E33L) GN=carA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.245e-14 Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ER I G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS K+P Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERKIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDP 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_METTH (Carbamoyl-phosphate synthase small chain OS=Methanobacterium thermoautotrophicum GN=carA PE=3 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMS-RSWDIVGIDLISDVSGKEP 360 SY GQ ++ T P GN GV + +S GL++R + S+ +TL +L E I GI+ VDTRA+T ++R G++ G L+TEE D ELLEM+ + DI IDL+ V +EP Sbjct: 47 SYRGQILMPTYPLQGNYGVTEEWYQSDGIKAEGLIVREMCPAPSHSLSEKTLPEFLEEYGIPGIAGVDTRALTIKIRDKGTMKGALATEEI-DDDELLEMAVKQPDITEIDLVDMVCVREP 166 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |