FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THET8 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=carA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14 Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGKEP 360 SY GQ V+MT PH GN GVN D +S + ++ G V + S SN R +T+G ++ ++GI +DTRA+ R++R+ G L G ++ + QE LE R +W DI G D+ +VS P Sbjct: 50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLP 180
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THET2 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=carA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14 Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGKEP 360 SY GQ V+MT PH GN GVN D +S + ++ G V + S SN R +T+G ++ ++GI +DTRA+ R++R+ G L G ++ + QE LE R +W DI G D+ +VS P Sbjct: 50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLP 180
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PORYE (Carbamoyl-phosphate synthase small chain OS=Porphyra yezoensis GN=carA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14 Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY Q V T P IGNTG+N D ES + GL+ +++ +S+WR ++L YL+ NI I +DTR++T+ LRQ G++ G +ST+ ++ + G+DLI V+ Sbjct: 51 SYFHQIVAFTYPEIGNTGINNQDIESHSISIKGLIAKNICKISSSWREQQSLVKYLSSNNIPFIFGIDTRSLTQYLRQFGTMNGCISTDNLNHSYLKQKICEIPSMQGLDLIPHVT 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACPL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Lactobacillus plantarum GN=pyrAA PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 9.458e-14 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL 246 SY G+ ++ T P IGN G+N DD ES + G+V+ ++ SNWR A++L +YL + I GI D+DTRA+T+ +R G++ Sbjct: 45 SYNGEILMFTYPLIGNYGINRDDHESIKPTCKGVVVHEVARRASNWRNAQSLDDYLKQNAIPGIMDIDTRAVTKHIRTKGAM 126
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_POLNS (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter necessarius (strain STIR1) GN=carA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13 Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVS 348 SY+ Q V +T PHIGN GVN D ES + AGLV++ L S++R L +YL + ++GI+ +DTR +TR LR G+ G + + E LE+++++ + G+DL V+ Sbjct: 53 SYSRQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVVKDLPKRVSSFRSEGALDDYLTKAGVLGIAGIDTRKLTRILRDKGAQSGAIVAGKVGDSYETLVSKALELAKAFPGMSGLDLAKVVT 174
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHOGE (Carbamoyl-phosphate synthase small chain OS=Rhodocyclus gelatinosus GN=carA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13 Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST-------EESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY Q V +T PHIGN GVN +D E+ + AGLVI+ L + SN+R A L YL + I+ +DTR +TR LR G+ G + + E++ + + + G+DL VS P Sbjct: 50 SYCRQIVTLTYPHIGNVGVNEEDVEAAKVHAAGLVIKDLPLRVSNFRAAMPLSQYLEREGTVAIAGIDTRRLTRVLRTTGAQNGCIVSFAPGTVVGEAEIAAAVAAAKAAPSMAGLDLAQVVSADAP 176
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CHLTE (Carbamoyl-phosphate synthase small chain OS=Chlorobium tepidum GN=carA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13 Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357 SY GQ V+MT P IGN G+ +D ES++ + + L++R S SN+ +L L E +MG++ +DTR + R +RQ G++ V+ST + + ++ G+DL+ V+ E Sbjct: 48 SYTGQMVVMTYPLIGNYGITPNDNESKKIWASALIVREASNVYSNYESTRSLDATLKEAGVMGLAGIDTRKLVREIRQKGAMRAVISTLCDDVAALKAQAAAIPEMTGLDLVQRVTTGE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THEEB (Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) GN=carA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13 Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360 SY GQ V T P +GNTG +D+ES + + G V R++ SNWR ++L +YL I I +DTRA+TR++R G++ G +STE + L ++ + + G +L V+ + P Sbjct: 47 SYYGQIVTFTYPELGNTGTTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRTVGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTP 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PORPU (Carbamoyl-phosphate synthase small chain OS=Porphyra purpurea GN=carA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13 Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY Q V T P IGNTG+N +D ES+ + GLV +++ +S+WR E+L YL I I +DTR++T+ LR+ G++ G +S + ++S + G+DLI +V+ Sbjct: 51 SYFQQIVTFTYPEIGNTGINSEDIESQTISIKGLVAKNICKISSSWRQQESLVQYLNRYKIPFIFGIDTRSLTQYLRRSGTMNGCISNKNLNHAYLQRKISEVPHMTGLDLIPNVT 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCLE (Carbamoyl-phosphate synthase small chain OS=Mycobacterium leprae GN=carA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13 Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTE---ESKSDQELLEMSRS-WDIVGIDLISDVS 348 SY Q V+ T P IGNTG N D ESR + ++AG +R S SNWR TL + L + I+GI+ +DTRA+ R LR+ GS+ GV S + E + + L++ R+ ++G DL+ + S Sbjct: 46 SYHRQIVVATAPQIGNTGWNDQDGESRDDRIWVAGYAVRDPSPCASNWRATGTLEDELVRQRIVGIAGIDTRAVVRHLRRYGSMKAGVFSGKAMIEPLNIEALVQHVRTQQSMLGADLVGEAS 168 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |