FC876357

Overview
NameFC876357
Unique NameFC876357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10337 contig Ccv1_Contig10337:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.536e-26
Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+DFA L  +   +L  G D +H D+MD H+VPNLTIG  V E+LR +   A +D HLMV  P+D + P   KAGAS  +FH E S ++    +Q IK  G + G+   P T +  +  +++    ++++L+M+V PGFGGQ F+   +DK+R
Sbjct:    6 IAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMV-KPVDRIVPDFAKAGASYISFHPEAS-EHVDRTIQLIKEHGCKAGLVFNPATPLSYLDYVMD---KIDVILLMSVNPGFGGQSFIHGTLDKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.006e-26
Identity = 63/159 (39.62%), Postives = 102/159 (64.15%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHT-KAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            +A S+LS+DFA L  + ++ ++ G+DW+H D+MD H+VPNLT+G  ++++LR +     +D HLMV  P+D + P   +AGA   TFH E S D+    +  IK  G + G+AL P TS+  +  ++E    ++++L+M+V PGFG Q F+P   +K+R
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMV-KPVDNLIPQFAEAGADFITFHPE-STDHIDRTLNLIKECGCKAGLALNPATSLNFLDYVME---KLDLILLMSVNPGFGNQSFLPTSFNKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 62/159 (38.99%), Postives = 103/159 (64.78%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHT-KAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            +APS+LS+DFA L  + +++++ G+D +H D+MD H+VPNL++G  ++ESLR +   A +D HLMV  P+D + P   KAGA+  TFH E +  + +  +  IK  G + G+A  P T +  +  ++E    ++++L+M+V PGFG Q F+P   +K+R
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMV-KPVDNLIPQFAKAGATFITFHPEATL-HIERTLNLIKENGCKAGLAFNPATPLNFLDYILE---KLDLILLMSVNPGFGNQSFLPSTFNKLR 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 69/159 (43.40%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPL-GKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            ++APS+LS+DFA L  E   I   GAD +H D+MD H+VPNLTIG  V E++R      +D HLMV  P+D + PL  KAGA+  +FH E S+ +    +  I+  G + G+ L P T +     L    + +++VL+M+V PGFGGQ F+P ++DKVR
Sbjct:   17 RLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMV-EPVDALIPLFAKAGANIISFHPEASR-HVDRTIGLIRDHGCKAGLVLNPATPLGW---LDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVR 170          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.837e-26
Identity = 66/160 (41.25%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            KI  S+LS+DF +L  E ++    G D+ H+D+MDGHFVPN+++G  + + ++K T+  ++ HLMV N   +V    +      TFH+E  K  ++ ++ RIKS G +P VAL P T ++ +  ++     V  VLVMTVEPGF GQKF+P M  K+R L
Sbjct:    3 KIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIEAVKFPFR-IINRIKSIGAKPIVALNPATPLDAIEYIL---GDVYAVLVMTVEPGFSGQKFIPVMTKKIRKL 156          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_AQUAE (Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.956e-26
Identity = 59/159 (37.11%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVRTL 631
            +APS+L+ D+  +  + +  +  GAD LH D+MDGHFVPN+T G  ++  +RK     +D HLM+ NP  Y+    +AGA+  + H+E +  +    +Q IK  G + GV + PGTS+  +    E     + VL+M+V PGF GQKF+   ++++R L
Sbjct:    4 LAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPIDAHLMIENPDKYIPKFVEAGANWISVHIE-NNYHIHRTLQLIKELGAKAGVVVNPGTSLSAI---EEALYYADYVLLMSVNPGFSGQKFIERSIERLRIL 158          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.698e-25
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKH-TKAYLDCHLMVTNPLDYVEP-LGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            IAPS+LS+D A L  + + +LN GAD +H D+MD H+VPNLT G  V ++LR +   A +D HLMV  P+D + P   KAGA+  TFH E S ++    +Q I+  G + G+   P   +  +  +++    V++VL+M+V PGFGGQ F+P  + K++
Sbjct:    6 IAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMV-KPVDRIIPDFAKAGANYITFHPE-SSEHIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLD---KVDVVLLMSVNPGFGGQSFIPATLKKLQ 159          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.783e-25
Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 2
Query:  152 KIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPL-GKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            ++APS+LS+DFA L  E   I   GAD +H D+MD H+V NLTIG  V E++R      +D HLMV  P+D + P+  KAGA+  +FH E S+ +    +  I+  G + G+ L P T +     L    + +++VL+M+V PGFGGQ F+P ++DKVR
Sbjct:   17 RLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMV-EPVDALIPMFAKAGANLISFHPEASR-HVDRTIGLIRDHGCKAGLVLNPATPLSW---LDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVR 170          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.943e-21
Identity = 58/160 (36.25%), Postives = 95/160 (59.38%), Query Frame = 2
Query:  155 IAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLR---KHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            ++ S+LS++F+ L  +   +L  G+D +H D+MD H+V NLT G  V+ESLR   K     +D HLM     D +    K   +  +FH E S +N ++ ++ IKS G + G+AL P T    +  L    + ++++L+M+V PGF GQKF+P +++K+R
Sbjct:    6 LSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE-STNNVEKTIKLIKSYGCKVGLALNPLT---PLCVLDNVLDKIDLILLMSVNPGFPGQKFIPSILNKIR 161          
BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: RPE_ENCCU (Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi GN=RPE1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.903e-17
Identity = 53/165 (32.12%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  128 KKKMGVTAKIAPSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKV 622
            KK++G+      S+L  +F NL  E   +   G   +H+D+MD  FV N+T G  +I  + +H   + D H+MV +PLD +  +     S  T H E+   +   + + ++ + +  G+AL P T V++           + VL+M+V+PGFGGQKF  E + KV
Sbjct:    7 KKRIGI------SILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRILEHDFVF-DVHMMVESPLDIIMQIDLERVSLVTIHSEVC--DKAGVAEYLRKRNVLFGIALNPETQVDDA-----EMRSADFVLIMSVKPGFGGQKFQEECLAKV 157          
The following BLAST results are available for this feature:
BLAST of FC876357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RPE_SERMA1.536e-2642.14Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_BUCAP2.006e-2639.62Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_BUCAI4.469e-2638.99Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPEC_RALEH4.469e-2643.40Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPE_METJA5.837e-2641.25Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]
RPE_AQUAE9.956e-2637.11Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus... [more]
RPE_HAEIN1.698e-2540.88Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPEP_RALEH3.783e-2542.14Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_BUCBP1.943e-2136.25Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_ENCCU2.903e-1732.12Ribulose-phosphate 3-epimerase OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G11EF DevOvary1 Citrus clementina cDNA clone C32003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876357 ID=FC876357; Name=FC876357; organism=Citrus clementina; type=EST; length=633bp
GATTTTAGCTTGCAACAAAAAAAAAAGAATCTTCTTGTCTCTCCGATTTC
TCTTCTCCGACAAAAAGAGTCCAAACCCGTGCGCATCTGAATCGGGTCGC
GTCGTGTCGTAAATCCAACCAAAACAAAAAAAAAAAATGGGCGTAACGGC
AAAAATAGCACCGTCAATGTTGTCGTCGGACTTCGCCAACTTAGCATCCG
AGGCCGAGCGCATACTCAACTGTGGGGCCGATTGGCTTCACATGGACATC
ATGGATGGGCACTTTGTTCCAAATCTAACTATTGGTGCTCCAGTGATTGA
AAGTTTGAGAAAGCATACAAAGGCATATCTTGATTGTCACCTAATGGTAA
CAAATCCTCTTGATTATGTTGAACCTCTGGGTAAAGCAGGTGCTTCAGGT
TTTACCTTTCATGTGGAGATATCCAAAGATAACTGGCAAGAACTTGTCCA
AAGAATTAAGTCTAAGGGCATGAGGCCTGGTGTGGCATTGAAGCCTGGTA
CATCCGTTGAAGAAGTTTATCCCCTGGTTGAAGGTGCAAATCCTGTGGAA
ATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGTCAAAAGTTCAT
GCCAGAAATGATGGATAAGGTGCGTACATTGAG
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