FC876357

Overview
NameFC876357
Unique NameFC876357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC876357 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 44/155 (28.39%), Postives = 76/155 (49.03%), Query Frame = 2 
Query:  161 PSMLSSDFANLASEAERILNCGADWLHMDIMDGHFVPNLTIGAPVIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHVEISKDNWQELVQRIKSKGMRPGVALKPGTSVEEVYPLVEGANPVEMVLVMTVEPGFGGQKFMPEMMDKVR 625
            PS+ S++  +   E   + N     LH+DI D  F+ N+T G   ++++ + T   L  H M+  P  +   L +   +    H E + D   E +  I+  G R G+   P T ++    L   A+ ++ V+VMT EP   GQ+F+P M +K++
Sbjct:    5 PSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE-TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRYL---ASELDGVMVMTSEPDGQGQRFIPSMCEKIQ 155
The following BLAST results are available for this feature:
BLAST of FC876357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SGCE_ECOLI2.812e-1228.39Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC32003G11EF DevOvary1 Citrus clementina cDNA clone C32003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876357 ID=FC876357; Name=FC876357; organism=Citrus clementina; type=EST; length=633bp
GATTTTAGCTTGCAACAAAAAAAAAAGAATCTTCTTGTCTCTCCGATTTC
TCTTCTCCGACAAAAAGAGTCCAAACCCGTGCGCATCTGAATCGGGTCGC
GTCGTGTCGTAAATCCAACCAAAACAAAAAAAAAAAATGGGCGTAACGGC
AAAAATAGCACCGTCAATGTTGTCGTCGGACTTCGCCAACTTAGCATCCG
AGGCCGAGCGCATACTCAACTGTGGGGCCGATTGGCTTCACATGGACATC
ATGGATGGGCACTTTGTTCCAAATCTAACTATTGGTGCTCCAGTGATTGA
AAGTTTGAGAAAGCATACAAAGGCATATCTTGATTGTCACCTAATGGTAA
CAAATCCTCTTGATTATGTTGAACCTCTGGGTAAAGCAGGTGCTTCAGGT
TTTACCTTTCATGTGGAGATATCCAAAGATAACTGGCAAGAACTTGTCCA
AAGAATTAAGTCTAAGGGCATGAGGCCTGGTGTGGCATTGAAGCCTGGTA
CATCCGTTGAAGAAGTTTATCCCCTGGTTGAAGGTGCAAATCCTGTGGAA
ATGGTTCTTGTAATGACTGTAGAACCTGGATTTGGTGGTCAAAAGTTCAT
GCCAGAAATGATGGATAAGGTGCGTACATTGAG
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