FC876741

Overview
NameFC876741
Unique NameFC876741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 26/66 (39.39%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +      ++    CVVC  ++EV ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  331 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 396          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: PJA2_RAT (E3 ubiquitin-protein ligase Praja2 OS=Rattus norvegicus GN=Pja2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  605 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: PJA2_PONAB (E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii GN=PJA2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  606 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: PJA2_MOUSE (E3 ubiquitin-protein ligase Praja2 OS=Mus musculus GN=Pja2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  605 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 678          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: PJA2_HUMAN (E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens GN=PJA2 PE=1 SV=4)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGE--CVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMP 619
            PPASK S++ +P   V E +  A+G E  C +C  EY   ++A E+PC H FH  C+  WL   G+CPVCR   P
Sbjct:  606 PPASKESIDGLPETLVLE-DHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFP 679          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +   S  ++    CVVC+ ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  442 TKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICR 507          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 25/66 (37.88%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +   +  ++    CVVC+ ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  439 TKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 504          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 24/66 (36.36%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +      ++    CVVC  ++E  ++ R +PC H+FH  C++KWL    +CP+CR
Sbjct:  356 TKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPICR 421          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  410 SKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            +KA +E +PS +      ++    CVVC  ++E  ++ R +PC H+FHA C++KWL    +CP+CR
Sbjct:  372 TKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLPCNHEFHAKCVDKWLKTNRTCPICR 437          
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  413 KASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIQGSCPVCRYKMPVEE 628
            ++ +E++P  + G       G EC VCL  +E  EV R +P CKH FH  C++ WL    +CP+CRY++  E+
Sbjct:  123 RSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPED 195          
The following BLAST results are available for this feature:
BLAST of FC876741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RNF44_MOUSE5.703e-1239.39RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]
PJA2_RAT9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Rattus norve... [more]
PJA2_PONAB9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Pongo abelii... [more]
PJA2_MOUSE9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Mus musculus... [more]
PJA2_HUMAN9.728e-1244.00E3 ubiquitin-protein ligase Praja2 OS=Homo sapiens... [more]
RNF38_MOUSE3.697e-1139.39RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF38_HUMAN3.697e-1137.88RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
RNF44_HUMAN4.828e-1136.36RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
RNF44_DANRE4.828e-1137.88RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]
ATL5C_ARATH6.305e-1138.36RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AD01RM1 EHR Citrus clementina cDNA clone KN0AAN3AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876741 ID=FC876741; Name=FC876741; organism=Citrus clementina; type=EST; length=691bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAAGCGAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGT
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