FC876741

Overview
NameFC876741
Unique NameFC876741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10408 contig Ccv1_Contig10408:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876741 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 38/116 (32.76%), Postives = 61/116 (52.59%), Query Frame = 2 
Query:  302 IILVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGG---ECVVCLEEYEVGEVAREMP-CKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEES 637
            +++V  LN G  + E  +    +L + V +       K  +E+ P+    E +   +G    EC +CL E+E  E  R MP C H FHANCI++WL  + +CPVCR  + ++  +S
Sbjct:   61 LLVVYCLNYGCCIEENETGGHEVLHSRVRRG----IDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDS 172
The following BLAST results are available for this feature:
BLAST of FC876741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ATL4D_ARATH8.235e-1132.76Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3AD01RM1 EHR Citrus clementina cDNA clone KN0AAN3AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876741 ID=FC876741; Name=FC876741; organism=Citrus clementina; type=EST; length=691bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAAGCGAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGT
back to top