FC876836

Overview
NameFC876836
Unique NameFC876836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP1A2_CANFA (Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = -1
Query:  330 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSERE-GFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWE-KIGAEVDMTASYGLSLFKT 740
            D   LP +   I E            PH ++++  + G++IP+   + +N W ++ D +VW +P  F+PERF   +G    +    K + FGMG+R C G  +A   I   L  L+Q  E+    G +VD+T  YGL++  T
Sbjct:  357 DRPQLPLMEAFILEIFRHTSFVPFTIPHSTTKDTTLKGFYIPKECCVFINQWQVNHDQQVWGDPFAFRPERFLTADGTTINKTLSEKVMLFGMGKRRCIGEVLAKWEIFLFLAILLQRLEFSVPAGVKVDLTPIYGLTMKHT 498          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 37/121 (30.58%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  288 VGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSEREG----FKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKI-GAEVDMTASYGLSLFKTVPLVAMCSPRQNMI 635
            + G +IP+G+T+++ ++ +H D + W EP +F+PERF     E +G    + ++PFG G R C G   A+  +  AL  ++Q F ++     ++ +  S  L L    P+V    PR  +I
Sbjct:  384 INGIYIPKGSTVIIPSYVLHHDPQHWPEPEEFQPERFS---KENKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQPCKETQIPLKLSRELLLQPVKPIVLKVVPRDAVI 501          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  288 VGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSEREG----FKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKI-GAEVDMTASYGLSLFKTVPLVAMCSPRQNMI 635
            + G +IP+G+T+M+ ++A+H D + W EP +F+PERF     E +G    + ++PFG G R C G   A+  +  AL  ++Q F ++     ++ +  S    L    P+V    PR  +I
Sbjct:  384 LNGVYIPKGSTVMIPSYALHHDPQHWSEPEEFQPERFS---KENKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQPCKETQIPLKLSRQGLLQPEKPIVLKVVPRDAVI 501          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP2DI_RAT (Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 48/152 (31.58%), Postives = 74/152 (48.68%), Query Frame = -1
Query:  300 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKIGAEVDMTASYGL--SLFKTVPLVAMCSPR 740
            D   +P+   VI E            PH +S +  V G+ IP+GTT+++N  ++ +D  VWE+P +F PE F   +G   + E F  +PF  GRRAC G  +A   +      L+Q F +  + A     ++YG+  +L    P     SPR
Sbjct:  352 DQARMPFTNAVIHEVQRFADILPLGVPHKTSRDIEVQGFLIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFVKHEAF--MPFSAGRRACLGEPLARMELFLFFTCLLQRFSF-SVPAGQPRPSNYGVFGALTTPRPYQLCASPR 500          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP17A_RAT (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus norvegicus GN=Cyp17a1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 37/119 (31.09%), Postives = 61/119 (51.26%), Query Frame = -1
Query:  393 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFE 740
            D  +L  L   I+E            PH ++ +  +G + +P+ T ++VN WA+H D   W++P++F PERF    G H       ++PFG G R+C G A+A + +      L+Q F+
Sbjct:  345 DRSHLLMLEATIREVLRIRPVAPMLIPHKANVDSSIGEFTVPKDTHVVVNLWALHHDENEWDQPDQFMPERFLDPTGSHLITPTQSYLPFGAGPRSCIGEALARQELFVFTALLLQRFD 463          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 43/159 (27.04%), Postives = 72/159 (45.28%), Query Frame = -1
Query:  300 MLNDVDLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF-----EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEK-IGAE-VDMTASYGLSLFKTVPLVAMCSPR 755
            ++ + D+  L Y+   I+E            PH +  +  + GY +P+G+ ++++   + R+ +VW+EP +F P+R        +       + I F  GRR C  A++         G L+Q F W K  G E VD++ S     F   PLV    PR
Sbjct:  390 LVQESDIPKLNYVKACIREAFRLHPVAPFNVPHVALADTTIAGYRVPKGSHVILSRTGLGRNPRVWDEPLRFYPDRHLATAASDVALTENDLRFISFSTGRRGCIAASLGTAMSVMLFGRLLQGFTWSKPAGVEAVDLSESKS-DTFMATPLVLHAEPR 547          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP4V2_PONAB (Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = -1
Query:  396 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSE-REGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCF 740
            DL  L YL CVIKET              S E+C V GY + +GT  ++  +A+HRD + +  P +F+PERF   +++ R  + ++PF  G R C G   A+      L  +++ F
Sbjct:  374 DLKKLRYLECVIKETLRLFPSVPLFARSVS-EDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 488          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 39/116 (33.62%), Postives = 60/116 (51.72%), Query Frame = -1
Query:  396 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSE-REGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCF 740
            DL  L YL CVIKET              S E+C V GY + +GT  ++  +A+HRD + +  P +F+PERF   +++ R  + ++PF  G R C G   A+      L  +++ F
Sbjct:  374 DLKKLRYLECVIKETLRLFPSVPLFARSVS-EDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 488          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP2J2_HUMAN (Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 39/114 (34.21%), Postives = 57/114 (50.00%), Query Frame = -1
Query:  396 NLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF--EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCF 731
            ++PY   VI E            P   + +  + GYH+P+GT I+ N  A+HRD   W  P+ F P+ F   G   +RE F  +PF +G+RAC G  +A   +     SL+Q F
Sbjct:  358 SMPYTNAVIHEVQRMGNIIPLNVPREVTVDTTLAGYHLPKGTMILTNLTALHRDPTEWATPDTFNPDHFLENGQFKKREAF--MPFSIGKRACLGEQLARTELFIFFTSLMQKF 469          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP2DH_MACFA (Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP2D17 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 43/142 (30.28%), Postives = 66/142 (46.48%), Query Frame = -1
Query:  324 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKIGAEVDMTASYGLSLFKTVP 740
            D   +PY   VI E             H +S +  + G+ IP+GTT+  N  ++ +D  VWE+P +F PE F   +G   + E F  +PF  GRRAC G  +A   +      L+Q F +  + A     + +G+  F   P
Sbjct:  349 DQARMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIELQGFLIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAF--LPFSAGRRACLGEPLARMELFLFFTCLLQRFSF-SVPAGQPRPSHHGVFAFLVTP 487          
The following BLAST results are available for this feature:
BLAST of FC876836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
CP1A2_CANFA3.300e-1130.99Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 ... [more]
CP3AG_MOUSE4.310e-1130.58Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
CP3AB_MOUSE4.310e-1131.40Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP2DI_RAT4.310e-1131.58Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d... [more]
CP17A_RAT4.310e-1131.09Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rattus... [more]
C79A1_SORBI4.310e-1127.04Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]
CP4V2_PONAB5.630e-1133.62Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2... [more]
CP4V2_HUMAN5.630e-1133.62Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP2J2_HUMAN5.630e-1134.21Cytochrome P450 2J2 OS=Homo sapiens GN=CYP2J2 PE=1... [more]
CP2DH_MACFA5.630e-1130.28Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BA08RM1 EHR Citrus clementina cDNA clone KN0AAN3BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876836 ID=FC876836; Name=FC876836; organism=Citrus clementina; type=EST; length=755bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAATTTTGCAGTTGGCAAT
GACTGTTGAAATCAAACCGATATTAAAAAACTACAGCAAAACCACAAAAC
AGGATTATCAAATCTAAAATTTGGTCACGCAATGCCATGGCATGAAGTGA
TCTACAGTCTCTAAAGTACTGCTCTACAAATTCCAGTAAATTTTACAACC
TTTATTGAAAGTCACCTGCAAGGTCCCCTGCAGGCCCCGAAAATTTCCAG
CGGCAAGTTTACCCTAACTGGATCTGTTCAGCATTCCAATCATATTTTGC
CGCGGACTGCACATAGCCACCAAAGGCACGGTCTTAAATAGAGATAGTCC
ATAACTTGCAGTCATGTCCACCTCCGCCCCTATCTTTTCCCACTCGAAGC
ACTGTATGAGCGAACCCAAAGCAAAAGAAATTGTACGGATAGCCATGGCT
GCACCTGGGCAAGCTCTCCTCCCCATGCCAAATGGAATATGTTTGAATCC
CTCTCTTTCACTATGAATCCCTTCAAATCTTTCAGGTTTGAACTTGTTAG
GCTCCTCCCACACCTTGGAATCCCTATGCATTGCCCAGGCATTCACCATT
ATCGTCGTGCCTCGTGGTATGTGATATCCACCCACTATGCAGTTCTCAGA
AGAAAAATGTGGCAACAGAAGTGGTGCCGGAGGATATAATCGCAGCGTCT
CTTTTATGACACAGCAAAGGTATGGAAGGTTGACAAGATCCACGTCATTT
AACAT
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