FC876836

Overview
NameFC876836
Unique NameFC876836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP2D1_RAT (Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = -1
Query:  321 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKIGAEVDMTASYGLSLFKTVPL 740
            D  ++PY   VI E            P F+S +  V  + IP+GTT+++N  ++ +D  VWE+P++F PE F   +G   + E F  +PF  GRRAC G  +A   +      L+Q F +  +       +++G   F   PL
Sbjct:  352 DQAHMPYTNAVIHEVQRFGDIAPLNLPRFTSCDIEVQDFVIPKGTTLIINLSSVLKDETVWEKPHRFHPEHFLDAQGNFVKHEAF--MPFSAGRRACLGEPLARMELFLFFTCLLQRFSF-SVPVGQPRPSTHGFFAFPVAPL 491          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP1B1_RAT (Cytochrome P450 1B1 OS=Rattus norvegicus GN=Cyp1b1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 42/139 (30.22%), Postives = 68/139 (48.92%), Query Frame = -1
Query:  339 DLVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF---EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLI--QCFEWEKIGAEVDMTASYGLSL 740
            D  NLPY+   + E+           PH ++ N  V GY+IP+ T + VN W+++ D   W  P  F P RF   +G  ++      + F +G+R C G  ++ +T+ F   S++  QC          +M+ SYGLS+
Sbjct:  374 DQPNLPYVMAFLYESMRFTSFLPVTLPHATTANTFVLGYYIPKNTVVFVNQWSVNHDPAKWSNPEDFDPARFLDKDGFINKALASSVMIFSVGKRRCIGEELS-KTLLFLFISILAHQCNFKANQNEPSNMSFSYGLSI 511          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 35/118 (29.66%), Postives = 59/118 (50.00%), Query Frame = -1
Query:  387 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWE 737
            L  + YL  V+ ET                ++  + G  +P+GT ++V  + +HRD  +W EP +F+PERF   H +    + ++PFG G R C G   A+  +  AL  ++Q F ++
Sbjct:  350 LAQMEYLDMVVNETLRLYPIAARLE-RACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPEEFRPERFSKKHKDTINPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFK 466          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = -1
Query:  387 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWE 737
            LV + YL  V+ ET                ++  + G  IP+GTT++V  + +H + ++W EP +F+PERF   + +    + ++PFG G R C G   AI  I  AL  ++Q F ++
Sbjct:  350 LVQMEYLDMVVNETLRMFPIAGRLE-RVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEFRPERFSKNNKDSINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFK 466          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 36/118 (30.51%), Postives = 59/118 (50.00%), Query Frame = -1
Query:  288 VGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKI-GAEVDMTASYGLSLFKTVPLVAMCSPRQNMI 635
            + G  IP+G  +M+ ++A+H D K W EP KF PERF   + +  + + + PFG G R C G   A+  +  AL  ++Q F ++     ++ +    G  L    P+V    PR   +
Sbjct:  383 INGVFIPKGVVVMIPSYALHYDPKYWTEPEKFLPERFSKNNKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLRLGGLLQTEKPIVLKVEPRDGTV 500          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 37/117 (31.62%), Postives = 59/117 (50.43%), Query Frame = -1
Query:  390 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEW 737
            LV + YL  V+ ET                ++  + G  IP+GTT+MV  + +H + + W EP +F+PERF   + +    + ++PFG G R C G   A+  I  AL  ++Q F +
Sbjct:   61 LVQMEYLDMVVNETLRMFPIAGRLE-RLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPEEFRPERFSKKNKDGINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 40/152 (26.32%), Postives = 69/152 (45.39%), Query Frame = -1
Query:  288 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKI-GAEVDMTASYGLSLFKTVPLVAMCSPRQNMI 737
            ++ L YL  V+ ET                ++  + G  IP+G  +M+ ++ +H D K W EP KF PERF   + +  + + + PFG G R C G   A+  +  AL  ++Q F ++     ++ +   +G  L    P+V     R   +
Sbjct:  350 VLQLEYLDMVVNETLRLFPVAMRLE-RVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFKPCKETQIPLKLRFGGLLLTEKPIVLKAESRDETV 500          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP11A_DASAM (Cholesterol side-chain cleavage enzyme, mitochondrial (Fragment) OS=Dasyatis americana GN=CYP11A1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 40/145 (27.59%), Postives = 73/145 (50.34%), Query Frame = -1
Query:  303 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKIGAEVDMTASYGLSLFKTVPLVAMCSP 737
            L ++P L CV+KET            + + E+ ++  YHIP GT + +  +AM R+ K+++ P ++ PER+  +  E   F+H+ FG G R C G  +A   +   +  ++Q F+ E      ++ + + L L    P+    +P
Sbjct:  372 LKSVPLLKCVVKETLRLYPVAISIQRYLN-EDTVLQNYHIPAGTLVQLGLYAMGRNPKIFKNPEQYNPERW--LKGEDTHFRHLGFGFGPRQCIGRRIAETQMVLLMIHMLQNFKIE-TDPMTEVKSKFSLILIPDKPINLKFTP 512          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: C516B_DICDI (Probable cytochrome P450 516B1 OS=Dictyostelium discoideum GN=cyp516b1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 45/150 (30.00%), Postives = 68/150 (45.33%), Query Frame = -1
Query:  381 MLNDVDLVNLP---------YLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERF----------------EGIHSEREGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCFEWEKI 755
            ++N V   NLP         YL   I+ET           P  +SE+  VGGY IP+GT +M++ + M  D + W++P+ F PER+                 G  S+ E F  IPFG+G R C G  +A   + +    +   F+W  +
Sbjct:  317 LINVVGKGNLPALVHRKDTSYLNACIQETMRIRTAAPLALPRIASEDIKVGGYTIPKGTQVMMSVYGMASDERYWKDPHIFNPERWLSSNHSTENGGGGGGVVGNSSQSEVF--IPFGVGPRMCVGMGVAKDELYYCASQMFMNFKWSPV 464          
BLAST of FC876836 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 36/115 (31.30%), Postives = 58/115 (50.43%), Query Frame = -1
Query:  396 LVNLPYLCCVIKETXXXXXXXXXXXPHFSSENCIVGGYHIPRGTTIMVNAWAMHRDSKVWEEPNKFKPERFEGIHSER-EGFKHIPFGMGRRACPGAAMAIRTISFALGSLIQCF 737
            L+ + YL  V+ ET                 +  + G  IP+GT +M+  +A+H+D K W EP +F+PERF   + +    + ++PFG G R C G   A+  +  AL  ++Q F
Sbjct:  350 LLQMEYLDMVVNETLRLYPIAGRLE-RVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKNQDSINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNF 463          
The following BLAST results are available for this feature:
BLAST of FC876836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
CP2D1_RAT5.630e-1130.77Cytochrome P450 2D1 OS=Rattus norvegicus GN=Cyp2d1... [more]
CP1B1_RAT5.630e-1130.22Cytochrome P450 1B1 OS=Rattus norvegicus GN=Cyp1b1... [more]
CP3AT_PIG7.352e-1129.66Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP3AS_BOVIN7.352e-1131.36Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AL_CALJA7.352e-1130.51Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP3AJ_CAPAE7.352e-1131.62Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]
CP3A7_HUMAN7.352e-1126.32Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP11A_DASAM7.352e-1127.59Cholesterol side-chain cleavage enzyme, mitochondr... [more]
C516B_DICDI7.352e-1130.00Probable cytochrome P450 516B1 OS=Dictyostelium di... [more]
CP3AD_MOUSE9.603e-1131.30Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3BA08RM1 EHR Citrus clementina cDNA clone KN0AAN3BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876836 ID=FC876836; Name=FC876836; organism=Citrus clementina; type=EST; length=755bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACATAATTTTGCAGTTGGCAAT
GACTGTTGAAATCAAACCGATATTAAAAAACTACAGCAAAACCACAAAAC
AGGATTATCAAATCTAAAATTTGGTCACGCAATGCCATGGCATGAAGTGA
TCTACAGTCTCTAAAGTACTGCTCTACAAATTCCAGTAAATTTTACAACC
TTTATTGAAAGTCACCTGCAAGGTCCCCTGCAGGCCCCGAAAATTTCCAG
CGGCAAGTTTACCCTAACTGGATCTGTTCAGCATTCCAATCATATTTTGC
CGCGGACTGCACATAGCCACCAAAGGCACGGTCTTAAATAGAGATAGTCC
ATAACTTGCAGTCATGTCCACCTCCGCCCCTATCTTTTCCCACTCGAAGC
ACTGTATGAGCGAACCCAAAGCAAAAGAAATTGTACGGATAGCCATGGCT
GCACCTGGGCAAGCTCTCCTCCCCATGCCAAATGGAATATGTTTGAATCC
CTCTCTTTCACTATGAATCCCTTCAAATCTTTCAGGTTTGAACTTGTTAG
GCTCCTCCCACACCTTGGAATCCCTATGCATTGCCCAGGCATTCACCATT
ATCGTCGTGCCTCGTGGTATGTGATATCCACCCACTATGCAGTTCTCAGA
AGAAAAATGTGGCAACAGAAGTGGTGCCGGAGGATATAATCGCAGCGTCT
CTTTTATGACACAGCAAAGGTATGGAAGGTTGACAAGATCCACGTCATTT
AACAT
back to top