FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCPN (Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  351 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            S + V+++FWA WCGPC++  P   + + + V  +   KVN DE   IA  Y I S+PT+++F+ G++K   IG +PK+ +   + +
Sbjct:   17 SNNKVIIDFWAEWCGPCKITGPEFAKAASE-VSTVAFAKVNVDEQTDIAAAYKITSLPTIVLFEKGQEKHRAIGFMPKAKIVQLVSQ 102          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.920e-12
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            V+V+FWA WCGPC++  P   + + ++    +  KVN D+   IA  Y I S+PT+++F+NG +K   IG +PK+ +
Sbjct:   21 VIVDFWAAWCGPCKLTSPEFQKAADEF-SDAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIGFMPKTKI 96          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 31/73 (42.47%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVP 581
            V+V+F+A WCGPC+MI P+I++ S+QY  +   YK++ DE   +A +  + ++PT+++FKNG++   V+GA P
Sbjct:   21 VVVDFYATWCGPCKMIAPMIEKFSEQY-PQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANP 92          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +T+      +L +   V+V+F+A WCGPC+++ PI +E++ Q        KV+ D++  I++ Y IRSIPTV+ F++G+  D  IG +PK+ L
Sbjct:    4 ITNKAELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVA-QDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNEL 95          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.813e-12
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            VLV+F+A WCGPCRM+ PI++ L+ + +  +   K+N DE+   A  Y + SIPT+++FK+G +   V+G   K  LT  I K
Sbjct:   19 VLVDFFAEWCGPCRMLTPILENLAAE-LPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINK 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.980e-12
Identity = 29/76 (38.16%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  348 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 575
            +S   ++++F A WC PCRMI PI ++L+K+++     +KV+ DE  S+A  +G+ ++PT +  K GE  D ++GA
Sbjct:   26 ESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGA 101          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            VL++F+A WCGPC+M+ P+++ L+ + +  +   KV+ D SP  A +Y + SIPT+++FK+G++ +  +G   K +L   I K
Sbjct:   19 VLIDFFAEWCGPCKMLTPVLEALAAE-LPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISK 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: PDIA6_MESAU (Protein disulfide-isomerase A6 OS=Mesocricetus auratus GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.109e-11
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGE 551
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A RYGIR  PT+ IF+ GE
Sbjct:  161 DVIELTDDTFDKNVLDSDDVWMVEFYAPWCGHCKNLEPEWATAATEVKEQTKGKVKLAAVDATVNQVLANRYGIRGFPTIKIFQKGE 247          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  348 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            ++G  V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA  K  L  +I K
Sbjct:   26 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVK 111          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  348 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            ++G  V+++F A WCGPCR I P+  E +K++ G +   KV+ DE   +A +Y + ++PT +  K+G + D V+GA  K  L  +I K
Sbjct:   26 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAV-FLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGA-RKDDLQNTIVK 111          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_MYCPN2.920e-1235.63Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 ... [more]
THIO_MYCGE2.920e-1238.96Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]
TRX1_YEAST3.813e-1242.47Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_MYCGA3.813e-1237.63Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
THIO_CHLPN3.813e-1242.17Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRXH4_ARATH4.980e-1238.16Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
THIO_CHLTR1.109e-1137.35Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
PDIA6_MESAU1.109e-1141.38Protein disulfide-isomerase A6 OS=Mesocricetus aur... [more]
TRXH_ORYSJ1.449e-1137.50Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.449e-1137.50Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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