FC876936
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M-type 4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 2.795e-47 Identity = 104/209 (49.76%), Postives = 133/209 (63.64%), Query Frame = 3 Query: 3 TRLFRSPLFVPTSDLPLFRWPPCSSASPFLALRLLRFSPPR-LNFRLLPLIRSLAVGNSPSSTGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQET---AVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 TR+F P+ S SSA+P ++ R R SP R L FR L RSL ++ + R + RG +I CEAQ+T AVEVP ++D+ WQ+ VL+S PVLVEFWAPWCGPCRMIHPI+D+L+K + GK K YK+NTDESP+ A RYGIRS+PTV+IFK GEKKD++IGAVP+ TL +IE+FL Sbjct: 11 TRVFSLPIAASVSS---------SSAAPSVSRR--RISPARFLEFRGLKSSRSLVTQSASLGANRRTR-----------------IARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_BRANA (Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44 Identity = 79/121 (65.29%), Postives = 103/121 (85.12%), Query Frame = 3 Query: 255 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 LRRG I+CEAQ+TA +P V D+TW+SLVL + PV+V+FWAPWCGPC+MI PI++EL++QY GK+K +K+NTD+SP+ +YG+RSIPT+MIF GEKKDT+IGAVPK+TL TSI+KFL Sbjct: 57 LRRGG-IICEAQDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFKLNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM1_ARATH (Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 7.125e-43 Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 3 Query: 177 PSSTGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 P S+GL+ R LRRG ++CEAQ+TA +P V D+TW SLVL + PV V+FWAPWCGPC+MI PI++EL+++Y G+ K YK+NTDESP+ +YG+RSIPT+MIF NGEKKDT+IGAV K TL TSI KFL Sbjct: 38 PESSGLRTR---VSLSSLSKNSRVSRLRRG--VICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.587e-42 Identity = 75/115 (65.22%), Postives = 97/115 (84.35%), Query Frame = 3 Query: 273 IVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 ++ A+E EV V D++W LV+ S +PVLV+FWAPWCGPCRMI PIIDEL+K+Y GK+KCYK+NTDESP+ AT+YGIRSIPTV+ FKNGE+KD+VIGAVPK+TL+ +EK++ Sbjct: 58 VLLHAREAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM2_ARATH (Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 2.073e-42 Identity = 79/147 (53.74%), Postives = 107/147 (72.79%), Query Frame = 3 Query: 177 PSSTGLKVRPXXXXXXXXXXXXXXXXLRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 P S+GL++R R A +VCEAQET ++ V D+TW SLVL + PV+V+FWAPWCGPC+MI P++++L++ Y GK+K YK+NTDESP+ +YG+RSIPT+MIF GEKKDT+IGAVPK+TLT+S++KFL Sbjct: 40 PESSGLRIRLSLSPASLTSIHQPRVSRLRRA-VVCEAQETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 2.708e-42 Identity = 77/121 (63.64%), Postives = 97/121 (80.17%), Query Frame = 3 Query: 255 LRRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 LR ++ C+ EV + W S+VL S +PVLVEFWAPWCGPCRMI P+IDEL+K+YVGK+KC KVNTD+SP+IAT YGIRSIPTV++FKNGEKK++VIGAVPK+TL T I+K++ Sbjct: 50 LRPASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEKKESVIGAVPKTTLATIIDKYV 170
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 169.088 bits (427), Expect = 2.292e-41 Identity = 74/119 (62.18%), Postives = 98/119 (82.35%), Query Frame = 3 Query: 261 RGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 R + +VC+A E EV V D++W+ VL+S PV+V+FWAPWCGPC++I P+IDEL+K+Y GK+ YK+NTDE+P IAT+Y IRSIPTV+ FKNGE+K+++IGAVPKSTLT SIEK+L Sbjct: 61 RYSSVVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_WHEAT (Thioredoxin M-type, chloroplastic OS=Triticum aestivum PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 7.373e-40 Identity = 73/120 (60.83%), Postives = 96/120 (80.00%), Query Frame = 3 Query: 258 RRGAQIVCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 RR ++ VC+ + EV + W ++V+ SPVLVEFWAPWCGPCRMI P+IDEL+K YVGK+KC KVNTD+ P+IA+ YGIRSIPTV++FK+GEKK++VIGAVPK+TL T I+K++ Sbjct: 54 RRPSRFVCKCKNVVDEVIVADEKNWDNMVIACESPVLVEFWAPWCGPCRMIAPVIDELAKDYVGKIKCCKVNTDDCPNIASTYGIRSIPTVLMFKDGEKKESVIGAVPKTTLCTIIDKYI 173
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_MAIZE (Thioredoxin M-type, chloroplastic OS=Zea mays GN=TRM1 PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 2.145e-39 Identity = 72/114 (63.16%), Postives = 91/114 (79.82%), Query Frame = 3 Query: 276 VCEAQETAVEVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 VC+++ EV + W LV+ +PVLVEFWAPWCGPCRMI P+IDEL+K Y GK+ C KVNTD+SP++A+ YGIRSIPTV+IFK GEKK++VIGAVPKSTLTT I+K++ Sbjct: 51 VCQSKNAVDEVVVADEKNWDGLVMACETPVLVEFWAPWCGPCRMIAPVIDELAKDYAGKITCCKVNTDDSPNVASTYGIRSIPTVLIFKGGEKKESVIGAVPKSTLTTLIDKYI 164
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3) HSP 1 Score: 149.828 bits (377), Expect = 1.439e-35 Identity = 63/105 (60.00%), Postives = 89/105 (84.76%), Query Frame = 3 Query: 303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617 E AV D T++++VL+S PVLV+FWAPWCGPCR+I P++DE++ +Y KLKC K+NTDESP++A+ YGIRSIPT+M+FK G+K +T+IGAVPK+T+ ++EK+L Sbjct: 35 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYL 139 The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bpback to top |