FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 31/83 (37.35%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            VLV+F+A WCGPC+M+ P+++ L+ + +  +   K++ D SP  A ++G+ SIPT+++FK+G++ +  +G   K +L   I K
Sbjct:   19 VLVDFFAEWCGPCKMLTPVLEALAAE-LPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISK 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: PDIA6_RAT (Protein disulfide-isomerase A6 OS=Rattus norvegicus GN=Pdia6 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 599
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: PDIA6_MOUSE (Protein disulfide-isomerase A6 OS=Mus musculus GN=Pdia6 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 599
            +V  +TD T+   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGI+  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVVELTDDTFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAATEVKEQTKGKVKLAAVDATVNQVLASRYGIKGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  351 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            S   ++++F A WC PCRMI P+  +L+K+++     +KV+ DE  ++A  +G+ ++PT ++ K+G   D V+GA  K  L  +I K
Sbjct:   27 SNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGA-RKEDLHATIAK 112          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: PDIA6_PONAB (Protein disulfide-isomerase A6 OS=Pongo abelii GN=PDIA6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 599
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: PDIA6_HUMAN (Protein disulfide-isomerase A6 OS=Homo sapiens GN=PDIA6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.892e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHP----IIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTT 599
            +V  +TD ++   VLDS    +VEF+APWCG C+ + P       E+ +Q  GK+K   V+   +  +A+RYGIR  PT+ IF+ GE      G   +S + +
Sbjct:  161 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 263          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  363 VLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSI 605
            V+++F A WCGPCR++ PI  +L+K++   +   KV+ DE   IA ++ + ++PT +  K G+ KD V+GA+ K  LTT +
Sbjct:   43 VVIDFTASWCGPCRIMAPIFADLAKKFPAAV-FLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAI-KEELTTKV 121          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  285 AQETAVEVPAVTDATWQSLVL---DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            A E    +   T  TW   +    +S + V+V+F A WCGPCR I P   +L+K+    L   KV+TDE  S+A+ + I+++PT M  K G+  D V+GA  K  L ++I K L
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL-FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGA-KKDELQSTIAKHL 113          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.472e-11
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 3
Query:  348 DSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 575
            D+   ++++F+A WCGPCRMI PI ++ S +Y G     KVN D +  I  RY I ++PT +  KN ++ D V GA
Sbjct:   20 DANRLIIIDFFANWCGPCRMISPIFEQFSAEY-GNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGA 94          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.216e-11
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 3
Query:  330 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVG-KLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKS 587
            W S +  SG  + V+ +A WCGPC+ I P+  +L+ +Y   K    KVN DE   IA+  G++++PT + F+NG++ D + GA P++
Sbjct:   12 WISTIPKSGY-LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQA 97          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_CHLMU1.449e-1137.35Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
PDIA6_RAT1.449e-1135.92Protein disulfide-isomerase A6 OS=Rattus norvegicu... [more]
PDIA6_MOUSE1.449e-1135.92Protein disulfide-isomerase A6 OS=Mus musculus GN=... [more]
TRXH2_BRANA1.892e-1135.63Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
PDIA6_PONAB1.892e-1135.92Protein disulfide-isomerase A6 OS=Pongo abelii GN=... [more]
PDIA6_HUMAN1.892e-1135.92Protein disulfide-isomerase A6 OS=Homo sapiens GN=... [more]
TRXH_WHEAT2.472e-1139.51Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH1_ARATH2.472e-1137.72Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
NGLY1_CAEEL2.472e-1142.11Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXL1_SCHPO4.216e-1137.93Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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