FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO1_CORNE (Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.672e-24
Identity = 48/98 (48.98%), Postives = 72/98 (73.47%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 608
            V ++ +QS VL S  PV+V+FWA WCGPC+MI P +DE++ +  G++K  KVN DE+P +A ++G+RSIPT+++FK+GE    ++GA PKS L   I+
Sbjct:    5 VDNSNFQSDVLQSSEPVVVDFWAEWCGPCKMIAPALDEIATEMAGQVKIAKVNIDENPELAAQFGVRSIPTLLMFKDGELAANMVGAAPKSRLADWIK 102          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_PSEAE (Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 47/98 (47.96%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 608
            VTDA+++  VL +  PVLV++WA WCGPC+MI P++DE+++ Y GKLK  K+N DE+     +YG+R IPT+M+FK+G  + T +GA+ KS L   ++
Sbjct:    8 VTDASFEQDVLKADGPVLVDYWAEWCGPCKMIAPVLDEVARDYQGKLKVCKLNIDENQDTPPKYGVRGIPTLMLFKDGNVEATKVGALSKSQLAAFLD 105          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_CHRVI (Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 608
            VTD +++  V  S  PVLV++WA WCGPC+M  P+ DE++ +Y G++K  K N DE+P+   RYG R IPT+M+F+ GE + T +GAV KS LT  ++
Sbjct:    7 VTDDSFEEEVXKSPDPVLVDYWADWCGPCKMXAPVXDEIADEYAGRVKXAKXNXDENPNTPPRYGXRGIPTLMLFRGGEVEATKVGAVSKSQLTAFLD 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.825e-22
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            +TD ++ + VL +   +LV+FWA WCGPC+MI PI+DE++ +Y GKL   K+N D++P  A +YGIR IPT+++FKNGE   T +GA+ K  L
Sbjct:    8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQL 100          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 45/100 (45.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:  318 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            TD  +Q+ +L+S    LV+FWA WCGPC M+ P+I+EL+  Y GK    K+N DE+P+ A +YGIRSIPT++I K G+  D ++GA+PK+ +   +++ +
Sbjct:    9 TDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEHI 108          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO1_CORNE5.672e-2448.98Thioredoxin C-1 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_PSEAE9.675e-2447.96Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3... [more]
THIO_CHRVI3.676e-2347.96Thioredoxin OS=Chromatium vinosum GN=trxA PE=1 SV=... [more]
THIO_SHIFL1.825e-2249.46Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY1.825e-2249.46Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI1.825e-2249.46Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI1.825e-2249.46Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL61.825e-2249.46Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO571.825e-2249.46Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]
THIO2_CHLTE3.112e-2245.00Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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