FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            VTD +++  VL +  PVLV+FWA WCGPCR I P ++ ++ +Y  K++  K+N DE+P  A +YG+ SIPT+ +++ GE   T++GA PK+ +   +E F+
Sbjct:    8 VTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 108          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 45/101 (44.55%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V+D ++++ VL S  PVLV+FWA WCGPC+MI PI++E++ +Y  +L+  K N DE+P+   +Y IR IPT+++FK G+ + T +GA+ K+ LT  ++  L
Sbjct:    8 VSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGKLEATKVGALSKAQLTAFLDSQL 108          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.017e-21
Identity = 46/101 (45.54%), Postives = 71/101 (70.30%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V D+ +   VL S +PV+V+FWAPWCGPCR+I PI+D+L+ +Y G+L   KVNTD++   A++ GI+ IPT++IFK+G +   ++GA P++      +K L
Sbjct:    7 VHDSDFAEKVLKSKTPVVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREIFDKVL 107          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_SHIFL (Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  315 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_ECOLI (Thioredoxin-2 OS=Escherichia coli (strain K12) GN=trxC PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  315 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_ECOL6 (Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  315 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_ECO57 (Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.869e-21
Identity = 46/103 (44.66%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  315 VTDATWQSL--VLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V +AT ++L  +L    PV+++FWAPWCGPCR   PI ++++++  GK++  KVNT+    +++R+GIRSIPT+MIFKNG+  D + GAVPK+   + + + L
Sbjct:   37 VINATGETLDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRFGIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL 139          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_STRCO4.065e-2242.57Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
THIO_THIFE9.055e-2244.55Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO_CHLAA2.017e-2145.54Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]
THIO2_SHIFL5.869e-2144.66Thioredoxin-2 OS=Shigella flexneri GN=trxC PE=3 SV... [more]
THIO2_ECOLI5.869e-2144.66Thioredoxin-2 OS=Escherichia coli (strain K12) GN=... [more]
THIO2_ECOL65.869e-2144.66Thioredoxin-2 OS=Escherichia coli O6 GN=trxC PE=3 ... [more]
THIO2_ECO575.869e-2144.66Thioredoxin-2 OS=Escherichia coli O157:H7 GN=trxC ... [more]
THIO_STAAW1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]
THIO_STAAU1.001e-2047.52Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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