FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  366 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.913e-20
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 3
Query:  366 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            LV+FWAPWCGPC+M+ P+IDEL+ +Y GK K  KVNTDE   ++ ++GIRSIPT++  K+GE    ++G   K  L   + K L
Sbjct:   22 LVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLL 105          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  366 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   IEK L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKHL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_THIRO (Thioredoxin (Fragment) OS=Thiocapsa roseopersicina GN=trxA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 41/83 (49.40%), Postives = 61/83 (73.49%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDT 563
            VTD +++  VL S  PVLV++WA WCGPC+MI P++DE++ +Y G++K  K+N DE+P+   RYGIR IPT+M+ +  E + T
Sbjct:    8 VTDDSFEDEVLKSLEPVLVDYWADWCGPCKMIAPVLDEIAGEYAGRIKVAKLNIDENPNTPRRYGIRGIPTLMLSRQSEVEAT 90          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STRCL (Thioredoxin OS=Streptomyces clavuligerus GN=trxA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 42/93 (45.16%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            VTD T+++ VL S  PVLV+FWA WCGPCR I P ++ ++ ++ G+++  K+N D++P+ A +YG+ SIPT+ +++ GE   T++GA PK+ L
Sbjct:    8 VTDDTFEADVLKSEKPVLVDFWAEWCGPCRQIAPSLEAIT-EHGGQIEIVKLNIDQNPATAAKYGVMSIPTLNVYQGGEVVKTIVGAKPKAAL 99          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.475e-20
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIE 608
            V+DA+++  VL +  P  V+FWA WCGPCR   P ++EL+     K+   K+N DE+P   ++YG+R IPT+MIFK+G+   T IGA+PK+ L   +E
Sbjct:    4 VSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATKIGALPKTKLFEWVE 101          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.446e-19
Identity = 45/103 (43.69%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  312 AVTDATWQSLVLD-SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            A+  AT QS   + S   VL +FWAPWCGPC+MI P+++EL ++   KLK  K++ DE+   A +YG+ SIPT+++ K+GE  +T +G  PK  L   + K L
Sbjct:    2 AIVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.221e-19
Identity = 40/84 (47.62%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  366 LVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A ++ + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_BUCBP (Thioredoxin OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=trxA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.206e-19
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +TD  ++  +L+S   VLV+FWA WC PC+++ PI+++++K+Y  KL   K+N D++P+ A +Y IR IP +++FKN E   T +GA+ K  L   +  +L
Sbjct:    8 LTDGIFKQYILESKKAVLVDFWAEWCNPCKILAPILEDIAKEYEHKLIVTKINIDKNPNTAPKYSIRGIPALLLFKNSELVGTKVGALSKVQLKDFLNLYL 108          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_BUCAI (Thioredoxin OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=trxA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 43/99 (43.43%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            +TD  ++  VL+S S  LV+FWA WC PC+++ PI++E+SK+Y  K+   K+N +E+P+ A  Y IRSIPT+++F N E   T +GAV K  L   +++
Sbjct:    7 LTDQNFEEQVLNSKSFFLVDFWAQWCNPCKILAPILEEISKEYSNKVIVGKLNIEENPNTAPVYSIRSIPTLLLFNNSEVLATKVGAVSKLELKEFLDE 105          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_HELPY2.913e-2050.00Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.913e-2050.00Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_STAS16.489e-2050.00Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_THIRO8.475e-2049.40Thioredoxin (Fragment) OS=Thiocapsa roseopersicina... [more]
THIO_STRCL8.475e-2045.16Thioredoxin OS=Streptomyces clavuligerus GN=trxA P... [more]
THIO_RHORU8.475e-2044.90Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_BACSU1.446e-1943.69Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO_STAHJ3.221e-1947.62Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_BUCBP4.206e-1939.60Thioredoxin OS=Buchnera aphidicola subsp. Baizongi... [more]
THIO_BUCAI9.371e-1943.43Thioredoxin OS=Buchnera aphidicola subsp. Acyrthos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
back to top