FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.598e-18
Identity = 41/101 (40.59%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +TDA +Q  +     PVLV+FWA WCGPCRM+ P+++E ++ +  K+   K+N DE+P   +++GI SIPT+++FK G     +IG  PK  L   +   L
Sbjct:    5 LTDANFQQAI-QGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLADVL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  306 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K+GE  +T+IG  PK  L   I K++
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.074e-18
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  306 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            V  +TDAT++     S   VL +FWA WCGPCRM+ P+++E+ ++    LK  K++ DE+P     +G+ SIPT++I K+GE  +T+IG  PK  L   I K++
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKYV 103          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+    ++GA  K+ L
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.353e-17
Identity = 38/93 (40.86%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +    L   K++ D +P  A  + + SIPT+++FK+G+    ++GA  K+ L
Sbjct:   12 VTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAAL 104          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.308e-17
Identity = 37/93 (39.78%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTL 593
            VTDA++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K++ D +P +A  + + SIPT+++F+ G+    ++GA  K+ L
Sbjct:  354 VTDASFFADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAKGKAAL 446          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_BUCAP (Thioredoxin OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trxA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 37/99 (37.37%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  315 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            +TD  ++  VL+  S VLV+FWA WC PC+++ PI++E++++Y  K+K  K+N +++P+ A  Y IR IP +++F   E   T +GA+ K  L   +++
Sbjct:    7 LTDQNFEKEVLEHKSFVLVDFWAEWCNPCKILAPILEEIAQEYFNKIKVGKLNIEKNPNTAPIYSIRGIPALLLFHGREVLATKVGAISKLQLKDFLDE 105          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.333e-16
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  327 TWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            T   L+  S  PV ++FWA WCGPC+M+ P + +L+ ++ G+L   KVN D+ P  A R+ ++ IP +M+F  G+ K    GA+P   +   + K
Sbjct:    4 TLDDLIRTSELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQLKWRTAGAIPYQQMRQEVLK 98          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.425e-16
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 3
Query:  312 AVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYK--VNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            AVTD ++ + VL S  PVLV+FWA WCGPC+M+ P+++E++ +   +L   K  V+ D +P+ A  + + SIPT+++FK+G     ++GA  K+ L   +   L
Sbjct:    9 AVTDDSFSTDVLGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAKGKAALLRELSDAL 112          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_TREPA (Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.160e-15
Identity = 33/89 (37.08%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  345 LDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 611
            +++   V+V+FWAPWCG C+M+ P+++E+  +    +   K+N D+   +A  + + SIPT+++FK+G++ D  IG V KS + T I+K
Sbjct:   15 IETNPLVIVDFWAPWCGSCKMLGPVLEEVESEVGSGVVIGKLNVDDDQDLAVEFNVASIPTLIVFKDGKEVDRSIGFVDKSKILTLIQK 103          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_ALIAC1.598e-1840.59Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
THIO_LISMO6.074e-1841.35Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN6.074e-1841.35Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO_MYCTU1.353e-1740.86Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO1.353e-1740.86Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
TRXB_MYCLE2.308e-1739.78Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_BUCAP1.954e-1637.37Thioredoxin OS=Buchnera aphidicola subsp. Schizaph... [more]
THIO1_CHLTE3.333e-1636.84Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_MYCSM7.425e-1638.46Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO_TREPA2.160e-1537.08Thioredoxin OS=Treponema pallidum GN=trxA PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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