FC876936

Overview
NameFC876936
Unique NameFC876936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length747
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876936_ssr669 microsatellite FC876936_ssr669:669..680. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7097 contig Ccv1_Contig7097:5..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_BORBU (Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 29/85 (34.12%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  360 PVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 614
            P +++F+A WCGPC+M+ PI ++LSK+Y   +  YKV+TD+   I++  G++S+PT++      K    +G + +      I+ F
Sbjct:   30 PAIIDFYANWCGPCKMLSPIFEKLSKKYENSIDFYKVDTDKEQDISSAIGVQSLPTILFIPVDGKPKVSVGFLQEDAFENIIKDF 114          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  351 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGA 575
            SG  V+++F+A WCGPC+MI P + ELS QY   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA
Sbjct:   19 SGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 93          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_CAEEL (Probable thioredoxin-2 OS=Caenorhabditis elegans GN=trx-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.003e-12
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  303 EVPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            ++ +V D T +  V+ S  PV+V+F A WCGPC+ + P ++E      G +   K+N D +  +A  YGI ++PTV  FKNGEK     G +    L   IE  L
Sbjct:   41 DIDSVEDFTEK--VIQSSVPVIVDFHAEWCGPCQALGPRLEEKVNGRQGSVLLAKINVDHAGELAMDYGISAVPTVFAFKNGEKISGFSGVLDDEQLDDFIEDVL 143          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  330 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  330 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.712e-12
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  330 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  306 VPAVTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKF 614
            V  VT       ++     V+V+F+A WCGPC+ I P  +E SK Y  K+   KV+ DE   +  +  I S+PT  ++KNG   DT++GA   S L   IEK+
Sbjct:    2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGA-NDSALKQLIEKY 102          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  333 QSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIG 572
            Q L+L     V+++F+A WCGPC++I P +DEL+ +Y  ++   KVN DE+  I   Y + S+PT +  K G   +  +G
Sbjct:   13 QQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVG 92          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  330 WQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 617
            +Q  V++S +PV+V+F A WCGPC+++ P ++++  +  GK+   KV+ D+   +A  Y + ++PTV+  KNG+  D  +G   +  L   ++K +
Sbjct:   70 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI 165          
BLAST of FC876936 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.236e-12
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  351 SGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPK 584
            SG  V+++F+A WCGPC+MI P + ELS Q+   +   KV+ DE   IA  Y I S+PT +  KNG K +   GA  K
Sbjct:   27 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAK 104          
The following BLAST results are available for this feature:
BLAST of FC876936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_BORBU1.003e-1234.12Thioredoxin OS=Borrelia burgdorferi GN=trxA PE=3 S... [more]
THIO2_DROYA1.003e-1246.67Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO2_CAEEL1.003e-1237.14Probable thioredoxin-2 OS=Caenorhabditis elegans G... [more]
THIOM_RAT1.712e-1232.29Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIOM_MOUSE1.712e-1232.29Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]
THIOM_HUMAN1.712e-1232.29Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
THIO_PLAF72.236e-1237.86Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
THIOT_DROME2.236e-1237.50Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIOM_BOVIN2.236e-1232.29Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
THIO2_DROME2.236e-1244.87Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DA03RM1 EHR Citrus clementina cDNA clone KN0AAN1DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876936 ID=FC876936; Name=FC876936; organism=Citrus clementina; type=EST; length=747bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAACGGGCCTTAAGGTC
AGACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTT
CAGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCG
TTGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGAC
TCTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTG
CCGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGA
AGCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACT
AGATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGA
GAAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCA
GCATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGA
AACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCT
TGGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTTG
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