FC877175

Overview
NameFC877175
Unique NameFC877175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877175 vs. ExPASy Swiss-Prot
Match: KSL4_ORYSJ (Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/183 (25.68%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   20 IMKWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEA-DIEDSVAYVRXXXXXXXXXXXXXXXMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSNTEMIDDVQKAFYIPLK 565
            +  W +   S  T+A W +S   P+MEEY++  +++ A    +L A  F+  +L     + A+YD + +L+    RL NDIQS+++E  DGK NSV L + ++ +   +E++   +                 +    +P+ CK++     K   +F+  ++ + S  EM+  +    + PLK
Sbjct:  657 VESWLDYLRSLATDAEWQRSKYVPTMEEYMKNSIVTFALGPTILIALYFMGQNLWEDIVKNAEYDELFRLMNTCGRLQNDIQSFERECKDGKLNSVSLLVLDSKDVMSVEEAKEAINESISSCRRELLRLVVRED-GVIPKSCKEMFWNLYKTSHVFYSQADGFSSPKEMMGAMNGVIFEPLK 838          
BLAST of FC877175 vs. ExPASy Swiss-Prot
Match: KSL4_ORYSI (Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. indica GN=KSL4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 47/183 (25.68%), Postives = 89/183 (48.63%), Query Frame = 2
Query:   20 IMKWYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRENPEA-DIEDSVAYVRXXXXXXXXXXXXXXXMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSNTEMIDDVQKAFYIPLK 565
            +  W +   S  T+A W +S   P+MEEY++  +++ A    +L A  F+  +L     + A+YD + +L+    RL NDIQS+++E  DGK NSV L + ++ +   +E++   +                 +    +P+ CK++     K   +F+  ++ + S  EM+  +    + PLK
Sbjct:  655 VESWLDYLRSLATDAEWQRSKYVPTMEEYMKNSIVTFALGPTILIALYFMGQNLWEDIVKNAEYDELFRLMNTCGRLQNDIQSFERECKDGKLNSVSLLVLDSKDVMSVEEAKEAINESISSCRRELLRLVVRED-GVIPKSCKEMFWNLYKTSHVFYSQADGFSSPKEMMGAMNGVIFEPLK 836          
BLAST of FC877175 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.198e-12
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 2
Query:   29 WYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVP---RLLNDIQSYQKEIADGK-QNSVILYLRENPEADIEDSVAYVRXXXXXXXXXXXXXXXMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYD-SNTEMIDDVQKAFYIPL 562
            W    AS+  EA WS +   P+  EY+E   +SIA  T+VL +  F    LP+Y  +  Q D  +K L LV    RL+ND ++YQ E   G+  +SV  Y+RENPE   E+++++V                 +  S+ P   ++L     +  Q+F+   + +  S+ EM D V +  + P+
Sbjct:  693 WEGLLASYTKEAEWSAAKYVPTFNEYVENAKVSIALATVVLNSIFFTGELLPDYILQ--QVDLRSKFLHLVSLTGRLINDTKTYQAERNRGELVSSVQCYMRENPECTEEEALSHV-YGIIDNALKELNWELANPASNAPLCVRRLLFNTARVMQLFYMYRDGFGISDKEMKDHVSRTLFDPV 872          
BLAST of FC877175 vs. ExPASy Swiss-Prot
Match: KSB_CUCMA (Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 47/181 (25.97%), Postives = 79/181 (43.65%), Query Frame = 2
Query:   29 WYETFASWLTEATWSKSGRTPSMEEYLETGMISIAAHTLVLTASCFLNPSLPNYKFRPAQYDTVTKLLMLVPRLLNDIQSYQKEIADGKQNSVILYLRE-NPEADIEDSVAYVRXXXXXXXXXXXXXXXMDGFSDLPRPCKQLHLFCMKAFQMFFHSSNRYDSNTEMIDDVQKAFYIPLKL 568
            W         EA WS +   PSM EY+E   +S A   ++L    F+ P L        +Y  + KL+    RL NDI+SY +E  +GK N + L++ +       E+++  ++                +  + +PR CK L    M    +F+   + Y SN  +++ V+  F  P+ L
Sbjct:  605 WLALLKVMRKEAEWSTNKVVPSMGEYMEQAHVSFALGPIILPMLFFVGPKLSEEMIGSCEYQKLYKLMSTAGRLKNDIRSYDRECKEGKLNILSLWMIDGGGNVTKEEAIEAIKGDFERAIRELLGLVLQEN-TTIPRACKDLFWKLMSIVNLFYMEDDGYTSN-RLMNTVKAMFEQPMDL 783          
The following BLAST results are available for this feature:
BLAST of FC877175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
KSL4_ORYSJ7.505e-1525.68Syn-pimara-7,15-diene synthase OS=Oryza sativa sub... [more]
KSL4_ORYSI7.505e-1525.68Syn-pimara-7,15-diene synthase OS=Oryza sativa sub... [more]
TPSD1_GINBI1.198e-1230.60Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
KSB_CUCMA5.947e-1225.97Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3DE09RM1 EHR Citrus clementina cDNA clone KN0AAN3DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877175 ID=FC877175; Name=FC877175; organism=Citrus clementina; type=EST; length=708bp
GCACGAGGCATATGAATTAATTATGAAGTGGTATGAAACGTTTGCCTCGT
GGCTTACGGAAGCAACGTGGAGCAAAAGCGGCCGCACACCATCGATGGAA
GAGTACCTTGAAACTGGAATGATCTCAATTGCTGCACACACTCTAGTTCT
TACAGCTTCATGTTTCTTGAACCCAAGCTTGCCAAATTACAAATTCAGGC
CAGCGCAGTATGATACCGTAACCAAACTGCTAATGCTCGTTCCCCGTCTG
TTGAATGACATTCAGAGCTACCAGAAGGAAATAGCAGACGGGAAACAAAA
CTCCGTTATACTATACTTGAGGGAAAATCCTGAGGCAGACATTGAAGATT
CAGTTGCGTACGTGAGAGAGTTAATAGCCGCAAAGGAGAAAGAGCTGTTG
GAACATGCTCTAATGGATGGGTTCAGTGATCTGCCAAGACCATGCAAGCA
GCTCCACTTATTTTGTATGAAAGCATTTCAGATGTTCTTTCACTCTTCAA
ATCGATATGACTCCAACACTGAAATGATTGATGACGTTCAAAAGGCTTTT
TACATTCCCCTCAAACTTCAAACCCCCAAGCCGTTGATAAAGCTTATGCT
TAATCAGCTTCCCCTTCCCCTTCATCATCATTCTAGATCAAAGAATGATT
ACCAATCGGTCGCCAACTGTTTCAATATTTACGGCAAAAGAAGCCTTGCT
GCCCCGCG
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