FC877872

Overview
NameFC877872
Unique NameFC877872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_PYRAB (Translation initiation factor 2 subunit alpha OS=Pyrococcus abyssi GN=eif2a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 45/144 (31.25%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  145 YPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            YPE    V+  VK I + GA++ L EY   E  +  SE             K G+     V+RVD  KG+IDLS RRV+++  +A  + + +++   ++++  AE LG D E  +  +  PL  ++G  + AF+    D   VL
Sbjct:    8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQRKAKLQEFKRAQKAENLLKLAAEKLGKDFETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_RABIT (Eukaryotic translation initiation factor 2 subunit 1 (Fragment) OS=Oryctolagus cuniculus GN=EIF2S1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE 258
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEG IL SE
Sbjct:    1 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGRILLSE 49          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_HYPBU (Translation initiation factor 2 subunit alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 44/143 (30.77%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  148 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            P+V   V+  VK + D GAY++L EY  +E  + +SE             K G+   V V+RV+K K  +D+S +RV++ + +     + +++    I+  VA+ LG  LEE Y  +G  L   YG    AF+ +V   +  L
Sbjct:    9 PDVGELVVATVKEVYDYGAYLTLDEYGGLEAYLPWSEVASRWVRSIHDVVKPGQKIVVKVIRVNKRKKQVDVSLKRVTDSERRRKMMEWKRAQKAERILELVAQKLGKSLEEAYEAVGKKLEDYYGELMAAFEEVVIRGEQAL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_METKA (Translation initiation factor 2 subunit alpha OS=Methanopyrus kandleri GN=eif2a PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.237e-11
Identity = 39/133 (29.32%), Postives = 67/133 (50.38%), Query Frame = 1
Query:  148 PEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFK 546
            PE    VM  V+ + D GA+V+L EY  ++G I  SE             K G+     V+RV+ ++ Y +LS R+V++   +   + + + +    ++   AE LG DL+E Y   G+ L  +YG  ++A +
Sbjct:    9 PEEGEIVMATVERVEDHGAFVTLDEYPGVDGYIHISEVASGWVKNIRDYVKEGQKVVAKVIRVNPKRKYANLSLRKVTDHQRKEKLKEWKREQRAEKLLEMAAEELGKDLDEAYEEAGYKLIEEYGSLYDALE 141          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIY (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIN (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIM (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIK (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIA (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.522e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+YV+L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYVTLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULIL (Translation initiation factor 2 subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eIF2A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 36/146 (24.66%), Postives = 74/146 (50.68%), Query Frame = 1
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            +R P     ++  VK + D G+Y++L EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SRLPSEGEILIATVKQVFDYGSYITLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVVVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQQLKLSEKDAWEQVAWKLEAKYGDPISAIERAVKEGEKIL 151          
The following BLAST results are available for this feature:
BLAST of FC877872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF2A_PYRAB1.717e-1231.25Translation initiation factor 2 subunit alpha OS=P... [more]
IF2A_RABIT6.523e-1265.31Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HYPBU6.523e-1230.77Translation initiation factor 2 subunit alpha OS=H... [more]
IF2A_METKA3.237e-1129.32Translation initiation factor 2 subunit alpha OS=M... [more]
IF2A_SULIY5.522e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIN5.522e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIM5.522e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIK5.522e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIA5.522e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]
IF2A_SULIL7.212e-1124.66Translation initiation factor 2 subunit alpha OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877872 ID=FC877872; Name=FC877872; organism=Citrus clementina; type=EST; length=879bp
CTCTCCGGTTGTCTTAAAACCCTAATTCTTGTTCCCACTCCCTTCGAATT
TTCCCGAGAAAACGCAAAAGCTAAAAAGCTTTCCGAGCAACCAATCATGG
CAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCG
GAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGG
CGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTT
TCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAA
GTCGGCCGCATCGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGG
TTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCT
GTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCGACAC
GTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATATTGG
CTGGCCCTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAAATCA
TTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAA
GAAATTGGCCCTGATGGACAGGAGGTAAACTTTGTTTGGTAGGGTTTTTG
TCTCGTTCTCTTCATTGATTACTCAGGTCATCGTTGTCCCATTCTAGGTA
ACTAAGGTGGTTCCTGCTGTGACGGAGGAAGTGAAAGATGCTTTGGTAAA
AAATATTAGGAGAAGAATGACCCCACAGCCATTGAAGATTCGAGCTGACA
TTGAAATGAAATGCTTCCAGTTTGATGGAGTTCTTCATATTAAGGATGCC
ATGCGGAAAGCTGAGGCTGCTGGCAACAA
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