FC877872

Overview
NameFC877872
Unique NameFC877872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SULSO (Translation initiation factor 2 subunit alpha OS=Sulfolobus solfataricus GN=eif2a PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 37/146 (25.34%), Postives = 74/146 (50.68%), Query Frame = 1 
Query:  139 ARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVL 576
            ++ P     ++  VK + D G+YVSL EY  ++  + +SE             K  R   V V+RVD+ KG +D+S ++V++++ +    ++ K + +  I+  V++ L +  ++ +  + W L  KYG    A +  V + + +L
Sbjct:    6 SKLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAVKEGEKIL 151
The following BLAST results are available for this feature:
BLAST of FC877872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF2A_SULSO9.419e-1125.34Translation initiation factor 2 subunit alpha OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877872 ID=FC877872; Name=FC877872; organism=Citrus clementina; type=EST; length=879bp
CTCTCCGGTTGTCTTAAAACCCTAATTCTTGTTCCCACTCCCTTCGAATT
TTCCCGAGAAAACGCAAAAGCTAAAAAGCTTTCCGAGCAACCAATCATGG
CAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCG
GAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGG
CGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTT
TCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAA
GTCGGCCGCATCGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGG
TTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCT
GTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCGACAC
GTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATATTGG
CTGGCCCTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAAATCA
TTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAA
GAAATTGGCCCTGATGGACAGGAGGTAAACTTTGTTTGGTAGGGTTTTTG
TCTCGTTCTCTTCATTGATTACTCAGGTCATCGTTGTCCCATTCTAGGTA
ACTAAGGTGGTTCCTGCTGTGACGGAGGAAGTGAAAGATGCTTTGGTAAA
AAATATTAGGAGAAGAATGACCCCACAGCCATTGAAGATTCGAGCTGACA
TTGAAATGAAATGCTTCCAGTTTGATGGAGTTCTTCATATTAAGGATGCC
ATGCGGAAAGCTGAGGCTGCTGGCAACAA
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