FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MFRN1_RAT (Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.440e-32
Identity = 74/190 (38.95%), Postives = 114/190 (60.00%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKE-----FFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNS 810
            M +G++AG +EH  MYPVD++KTRMQ +          +  A   ++  EG     RG+  M +GAGPAHA+YF+ YE  K      F   G  N+ +A+ ++G  +T+  DAV+ P ++VKQRLQ+ +S ++    C++ V   EG+GAFY SY T + MN PFQ++HF TYE ++  +    +++P S
Sbjct:   49 MTAGAMAGILEHSIMYPVDSVKTRMQSLNPDPKARYTSIYGALKRIMHTEGFWRPLRGLNVMMMGAGPAHAMYFACYENMKRTLNDVFSHQG--NSHLANGIAGSMATLLHDAVMNPAEVVKQRLQMYNSQHQSALSCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPRRDYNPQS 236          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MFRN1_MOUSE (Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.440e-32
Identity = 75/190 (39.47%), Postives = 114/190 (60.00%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKE-----FFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL---MEFDPNS 810
            M +G++AG +EH  MYPVD++KTRMQ +          +  A   ++  EG     RG+  M +GAGPAHA+YF+ YE  K      F   G  N+ +A+ V+G  +T+  DAV+ P ++VKQRLQ+ +S ++    C++ V   EG+GAFY SY T + MN PFQ++HF TYE ++  +    +++P S
Sbjct:   49 MTAGAMAGILEHSIMYPVDSVKTRMQSLNPDPKARYTSIYGALKRIMHTEGFWRPLRGLNVMMMGAGPAHAMYFACYENMKRTLNDVFSHQG--NSHLANGVAGSMATLLHDAVMNPAEVVKQRLQMYNSQHQSAFSCIRTVWRTEGLGAFYRSYTTQLTMNIPFQSIHFITYEFLQEQVNPRRDYNPQS 236          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MRS4_YEAST (Mitochondrial RNA-splicing protein MRS4 OS=Saccharomyces cerevisiae GN=MRS4 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.219e-30
Identity = 71/176 (40.34%), Postives = 106/176 (60.23%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKE--FFPGGVPNNS-MAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            +++G+ AG +EH  M+P+D LKTR+Q  G ++      + Q  S +  +EG    ++G+ ++ LGAGPAHAVYF  YE CK     P  +  +  M  A+SG  +T+A+DA++ P D VKQRLQL ++    V +  K++   EG  AFY SY TT+ MN PF A +F  YE+  +
Sbjct:   27 LLAGAFAGIMEHSLMFPIDALKTRVQAAGLNKAASTGMISQ-ISKISTMEGSMALWKGVQSVILGAGPAHAVYFGTYEFCKARLISPEDMQTHQPMKTALSGTIATIAADALMNPFDTVKQRLQLDTN--LRVWNVTKQIYQNEGFAAFYYSYPTTLAMNIPFAAFNFMIYESASK 199          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MRS3_YEAST (Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae GN=MRS3 PE=1 SV=4)

HSP 1 Score: 132.109 bits (331), Expect = 4.205e-30
Identity = 77/215 (35.81%), Postives = 116/215 (53.95%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAH-----AVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHXXXXXXXXXXXXXXXXPLD 894
            +I+G+ AG +EH  M+P+D LKTR+Q   A + L    +    S +   EG    ++G+ ++ LGAGPAHAVYF  YE CK+       +++  H     A+SG  +T ASDA++ P D +KQR+QL +S    V    K++   EG+ AFY SY TT++MN PF A +F  YE+  + L     N  ++ + ++H                PLD
Sbjct:   37 LIAGAFAGIMEHSVMFPIDALKTRIQSANA-KSLSAKNMLSQISHISTSEGTLALWKGVQSVILGAGPAHAVYFGTYEFCKKNLIDS--SDTQTHHPFKTAISGACATTASDALMNPFDTIKQRIQLNTS--ASVWQTTKQIYQSEGLAAFYYSYPTTLVMNIPFAAFNFVIYESSTKFL-----NPSNEYNPLIHCLCGSISGSTCAAITTPLD 241          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YIA6_YEAST (Uncharacterized mitochondrial carrier YIL006W OS=Saccharomyces cerevisiae GN=YIL006W PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 59/181 (32.60%), Postives = 96/181 (53.04%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPL---HPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPN-NSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +SG+ AG +  +A+ P+D  KTR+Q  G        +  G+    S++++ EGP G Y+G+  + LG  P   +YFSVYE  K+FF G  P  + +A + + + +  AS  +  P+ +VK RL L+S      + YKG  D  +++  +EG  A YA      ++     A+HF  YE +K
Sbjct:   82 LSGAFAGFLSGVAVCPLDVAKTRLQAQGLQTRFENPYYRGIMGTLSTIVRDEGPRGLYKGLVPIVLGYFPTWMIYFSVYEFSKKFFHGIFPQFDFVAQSCAAITAGAASTTLTNPIWVVKTRLMLQSNLGEHPTHYKGTFDAFRKLFYQEGFKALYAGL-VPSLLGLFHVAIHFPIYEDLK 261          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCFJ_DICDI (Mitochondrial substrate carrier family protein J OS=Dictyostelium discoideum GN=mcfJ PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 56/195 (28.72%), Postives = 93/195 (47.69%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPA----GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNS----MAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS----PYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            F+ F++ GSI      + M+P+D ++TR+QV G+   +       G    F  +++LEG    Y+G      G   + A+YF  YE  K+ F  G  ++         +SG  S   +  +  P D+  Q +Q++ S     YKG +D  K++  E GI   Y  +  T+I N P+  + + TYE  K  L +F+
Sbjct:   33 FYNFLLGGSI-----DLLMFPLDVIRTRLQVQGSQNVIQSFPQYNGTFDGFKKLIRLEGKRALYKGFLTSECGYLCSRAIYFGSYEFVKQGFLKGRSDSDSDLLFVTTISGAISEALASVIWVPFDVATQSVQIQGSLSKPKYKGGSDVFKKIYGERGIKGLYKGFGATIIRNVPYSGIWWGTYEISKSKLTQFN 222          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YM39_YEAST (Uncharacterized mitochondrial carrier YMR166C OS=Saccharomyces cerevisiae GN=YMR166C PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 69/248 (27.82%), Postives = 111/248 (44.76%), Query Frame = 1
Query:  166 PKYRTPDFHPEISVNP-----SKTKETTIH--------DGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPA-GFYRGIAAMGLGAGPAHAVYFSVYELCKE-FFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK---SSP-------YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            P   TP  HP  S        +  K+  +H        D    W  ++SG I G +   AM+ +DT+KTR Q  GA        +  A+ ++   EG   G Y G  A  LG+ P+ A++F  YE  K         N+++ H  +G      S  V  P +++K RLQL+   ++P       Y  + + +K V+ EEG  + +  Y+ T+  + PF A+ FA YE  ++   + +   G D  L +
Sbjct:   11 PIIHTPHDHPPTSEGTPDQPNNNRKDDKLHKKRGDSDEDLSPIWHCVVSGGIGGKIGDSAMHSLDTVKTRQQ--GAPNVKKYRNMISAYRTIWLEEGVRRGLYGGYMAAMLGSFPSAAIFFGTYEYTKRTMIEDWQINDTITHLSAGFLGDFISSFVYVPSEVLKTRLQLQGRFNNPFFQSGYNYSNLRNAIKTVIKEEGFRSLFFGYKATLARDLPFSALQFAFYEKFRQLAFKIEQKDGRDGELSI 256          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2545_HUMAN (Solute carrier family 25 member 45 OS=Homo sapiens GN=SLC25A45 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-18
Identity = 57/187 (30.48%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQ------VIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYE-LCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQ---LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            +    ++G   G ++   + P D +K R+Q          S P    G     +S+ + EGP G +RG  A+ L   P   +YF  YE LC+++ P G   +S    V+G F+ +AS    TP+DM+K R+Q   L+   Y+G+ DC+   + +EG+G F+           P  AV F +YE + R
Sbjct:   99 YMHIFLAGCTGGFLQAYCLAPFDLIKVRLQNQTEPRAQPGSPPPRYQGPVHCAASIFREEGPRGLFRGAWALTLRDTPTVGIYFITYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWVAATPLDMIKSRMQMDGLRRRVYQGMLDCMVSSIRQEGLGVFFRGVTINSARAFPVNAVTFLSYEYLLR 285          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2545_MOUSE (Solute carrier family 25 member 45 OS=Mus musculus GN=Slc25a45 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 61/188 (32.45%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQ-------VIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYE-LCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQ---LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            +    I+G   G ++   + P D +K R+Q        I +S P +   V  A +S+L+ EGP G +RG  A+ L   P   +YF  YE LC+++ P G   +S    V+G F+ +AS    TP D++K R+Q   LK   Y G+ DC+     +EGIG F+           P  A  F +YE + R
Sbjct:   99 YTNIFIAGCTGGLLQAYCLAPFDLIKVRLQNQTEPRMQISSSMPRYRGPVHCA-ASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEGLCRQYTPEGQNPSSATVLVAGGFAGIASWITATPFDVIKSRMQMDGLKGRKYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATFLSYEYLLR 285          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.298e-18
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            ++W+ +++G IAG+V   +  P+D LK  MQV G+       G RQ    ++K  G    +RG     +   P  AV F VYE  K+     G    +    +SG  +   +   I PM+++K RL + K+  Y G+ DC K++L  EG GAFY  Y   ++   P+  +  A YE +K
Sbjct:  193 QWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQVHGSKSMNIFGGFRQ----MIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAGATAQTFIYPMEVMKTRLAVGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLK 367          

HSP 2 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 47/183 (25.68%), Postives = 82/183 (44.81%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAV-----SGVFSTVASDAVITPMDMVKQRLQ----LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            ISGS+AG+     +YP++ +KTR+ V    +    +G+      +LK EG   FY+G     LG  P   +  +VYEL K  +      +S+   V      G  S+        P+ +V+ R+Q    L+ +P   +    +R++ +EG+   Y       +   P   + +  YE +K+ L
Sbjct:  291 ISGSMAGATAQTFIYPMEVMKTRLAV---GKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPYAGIDLAVYELLKSHWLDNFAKDSVNPGVLVLLGCGALSSTCGQLASYPLALVRTRMQAQAMLEGAPQLNMVGLFRRIISKEGLPGLYRGITPNFMKVLPAVGISYVVYENMKQTL 470          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
MFRN1_RAT3.440e-3238.95Mitoferrin-1 OS=Rattus norvegicus GN=Slc25a37 PE=2... [more]
MFRN1_MOUSE3.440e-3239.47Mitoferrin-1 OS=Mus musculus GN=Slc25a37 PE=1 SV=1[more]
MRS4_YEAST3.219e-3040.34Mitochondrial RNA-splicing protein MRS4 OS=Sacchar... [more]
MRS3_YEAST4.205e-3035.81Mitochondrial RNA-splicing protein MRS3 OS=Sacchar... [more]
YIA6_YEAST1.958e-1932.60Uncharacterized mitochondrial carrier YIL006W OS=S... [more]
MCFJ_DICDI1.958e-1928.72Mitochondrial substrate carrier family protein J O... [more]
YM39_YEAST5.696e-1927.82Uncharacterized mitochondrial carrier YMR166C OS=S... [more]
S2545_HUMAN1.657e-1830.48Solute carrier family 25 member 45 OS=Homo sapiens... [more]
S2545_MOUSE2.827e-1832.45Solute carrier family 25 member 45 OS=Mus musculus... [more]
SCMC1_RABIT6.298e-1831.84Calcium-binding mitochondrial carrier protein SCaM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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