FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: HDCPB_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog B OS=Danio rerio GN=hdmcpb PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.954e-12
Identity = 58/189 (30.69%), Postives = 78/189 (41.27%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQV-------IGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-----GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQ---LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            ++G   G  + + M P D +K R+Q        I         G  Q    + + EG  G Y+G AA+ L  GP+ A YF  Y    E         G P   +A  VSG+       AV TPMD++K RLQ   +    Y+G   C+   +  EG G  +       I   P     FA YEAV R L
Sbjct:  103 LAGFTGGVTQVLVMAPADIVKVRLQCQTEPVQHISQESSSKYRGPVQCLLRIARDEGLLGLYKGSAALALRDGPSFATYFLTYNTICEILTTENQRPGWPVVLLAGGVSGMCGW----AVGTPMDVIKSRLQVDGVSGRRYRGFLHCITHSVRTEGSGVLFRGLTVNCIRAFPVNMSVFAMYEAVVRLL 287          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2539_HUMAN (Solute carrier family 25 member 39 OS=Homo sapiens GN=SLC25A39 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 39/149 (26.17%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  361 PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDP 804
            P    G   AF  +++ EG    + G+ A  +   PA A+YF+ Y+  K F  G  + ++  A  V+G  + + +  VI+P+++++ +LQ +   Y+ +  CV+  + + G  + +  +  T + + PF A+++  YE VK  L    P
Sbjct:  101 PTRFTGTMDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELMRTKLQAQHVSYRELGACVRTAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLNGLRP 249          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 51/217 (23.50%), Postives = 94/217 (43.32%), Query Frame = 1
Query:  196 EISVNPSKTKETTIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP---GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPY--KGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLV 831
            E S  P    +  + +G+ +W+ +++G  AG+V      P D +K  +QV   S   +  GV      +    G   F+RG     +   P  A+ F  Y+  K       G    ++     +G  +   S + I PM+++K RL L+ +    +G+     ++  +EGI  FY  Y   +I   P+  +  A YE +KR  + +   + S+  ++
Sbjct:  230 EDSQIPEDFSQQEMQEGI-WWRHLVAGGAAGAVSRTCTAPFDRIKVYLQV--NSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQSTIYPMEVMKTRLALRKTGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLKRTYVRYYETNSSEPGVL 443          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC1_CAEEL (Probable calcium-binding mitochondrial carrier K02F3.2 OS=Caenorhabditis elegans GN=K02F3.2 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 57/210 (27.14%), Postives = 96/210 (45.71%), Query Frame = 1
Query:  199 ISVNPSKTKETTIHDGLE----------FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVF-STVASDAVITPMDMVKQRLQLKS----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            + V P K  + T++D +            +  +I+G   G  + +   P++ +K R+Q  G    +  AG +    +VLK  G  G Y+G  A  L   P  A+YF  Y   K         NS     +  F + V +  ++TP D++K RLQ+ +    + Y GV DC ++++ EEG  + +      V  ++P  AV   TYE ++R
Sbjct:  440 VGVAPEKAIKLTMNDYMRDKFTKDGKIPLYGEIIAGGTGGMCQVVFTNPLEIVKIRLQTAGE---VQQAGKKIGVFTVLKELGFLGLYKGSRACFLRDIPFSAIYFPAYAHAKLASADEDGMNSPGTLFASAFIAGVPAAGLVTPADVIKTRLQVAARAGQTTYNGVIDCARKLIKEEGPMSLWKGTAARVCRSSPQFAVTLLTYEVLQR 646          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_ASPOR (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus oryzae GN=tpc1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.744e-12
Identity = 50/191 (26.18%), Postives = 89/191 (46.60%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG--GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            ++G+ AG +   + YP+D L+TR    G  R      +  +   + + EGP GF+RG +A      P   ++F+ YE  +    G   +P  S   A +GV ++V +   + P+D+V++RLQ++              Y+GV + +  ++  +G+   Y     ++   AP  AV   TYE     L E +
Sbjct:  127 VAGATAGGLATASTYPLDLLRTRFAAQGTERVY--TSLYASVRDIAQNEGPKGFFRGCSAAVGQIVPYMGLFFATYESLRPVMSGLHDLPFGS-GDAAAGVVASVLAKTGVFPLDLVRKRLQVQGPTRSKYVHRNIPEYQGVYNTMAMIVRTQGMRGLYRGLTVSLFKAAPASAVTMWTYEKSLHYLRELE 314          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ODC_RAT (Mitochondrial 2-oxodicarboxylate carrier OS=Rattus norvegicus GN=Slc25a21 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 50/176 (28.41%), Postives = 83/176 (47.16%), Query Frame = 1
Query:  271 SGSIAGSVEHMAMYPVDTLKTRMQVI-GASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPY---KGVADCVKRVLVEEGIG--AFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +G  AG VE   M+P+D +KTR QV    + P     +R +F  + + EG  GFY+GI    L   P  AV FS +EL K+F      +  +   ++G+ S +    V+ P ++VK  LQ+  + +          ++++ +EG G       +  T+  +  F   +F  Y  VK
Sbjct:   18 AGGCAGLVEICLMHPLDVVKTRFQVQRSVTDPQSYKSLRDSFQVIFRTEGLFGFYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTFPIAGLGSGLTEAVVVNPFEVVKVGLQVNRNMFTEQPSTFAYARQIIKKEGWGFQGLNKGFTATLGRHGIFNMTYFGFYYNVK 193          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MPCP_YEAST (Mitochondrial phosphate carrier protein OS=Saccharomyces cerevisiae GN=MIR1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 44/180 (24.44%), Postives = 83/180 (46.11%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVAS------DAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYE 771
            ++ +F ++G+I     H +M P+D +KTR+Q+      ++  G+  +F  ++  EG      G     LG     A  F  YE+ K+FF   +  ++ +   + V+   A+      D  + P++  + RL  +     G+     R+L EEGIG+FY+ +   +    P+    F  +E
Sbjct:   16 DYMKFALAGAIGCGSTHSSMVPIDVVKTRIQL---EPTVYNKGMVGSFKQIIAGEGAGALLTGFGPTLLGYSIQGAFKFGGYEVFKKFFIDNLGYDTASRYKNSVYMGSAAMAEFLADIALCPLEATRIRLVSQPQFANGLVGGFSRILKEEGIGSFYSGFTPILFKQIPYNIAKFLVFE 192          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: COLT_DROME (Congested-like trachea protein OS=Drosophila melanogaster GN=colt PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 49/185 (26.49%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAF---SSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGG------VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP-----YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            ++G   G    ++ +P+DT+K R+Q +    P      R  F   +  +K EG  G Y+G++A   G  P  A+ F+ Y L K     G       P   +A + SG+FST+    ++ P + +K  LQ +        Y G+ DC  ++  E G+ + +     T++ + P   ++F  YEA++
Sbjct:   20 LTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFVAGSFSGLFSTL----IMAPGERIKVLLQTQQGQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQ 200          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YDE9_SCHPO (Uncharacterized mitochondrial carrier C12B10.09 OS=Schizosaccharomyces pombe GN=SPAC12B10.09 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 47/184 (25.54%), Postives = 84/184 (45.65%), Query Frame = 1
Query:  238 HDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF--PGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGA-FYASYRTTVIMNAPFQAVHFATYEAVK 780
            H  + F++ + +G  AG    ++++P+DTLKTR+Q  G                 +K  G  G YRG+ ++ +G+ P  +++F+ YE  K      G   ++   H  S     +A+  V  P +++KQR Q          + ++ +L    +   FYA Y  T+    PF  + F  +E +K
Sbjct:   77 HSAMSFFEALGAGICAGLAVDLSLFPIDTLKTRLQAKG---------------GFVKNGGFHGVYRGLGSILVGSAPGASLFFTTYENMKSRLSQSGLGLSDPQIHMCSASLGEIAACIVRVPTEVIKQRAQASGGTLSS-RNILQTILKSNNVWRDFYAGYGITIAREIPFTLIQFPIWEHLK 244          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YBT5_SCHPO (Uncharacterized mitochondrial carrier C12D12.05c OS=Schizosaccharomyces pombe GN=SPBC12D12.05c PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 54/193 (27.98%), Postives = 83/193 (43.01%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVL-KLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-------------GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            ++G +AGSV  M +YPVDTLK R+Q    SR  H   +  + +  L K  G  G+YRG+    LG  P  A     +E  K  + G              +PN  +     G  S      ++ P+++++ RLQ +      + Y G  DC  +    EG    Y      ++  AP  A+ +  YE  K+ L
Sbjct:  233 LAGGMAGSVAQMFIYPVDTLKFRIQCSDLSRGQHGKSIILSNAKELYKSVGIRGYYRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLV--MAFGALSGSTGATIVFPLNVIRTRLQTQGTSAHPATYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKKWL 423          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
HDCPB_DANRE3.954e-1230.69Hepatocellular carcinoma down-regulated mitochondr... [more]
S2539_HUMAN5.164e-1226.17Solute carrier family 25 member 39 OS=Homo sapiens... [more]
CMC2_CAEEL5.164e-1223.50Putative calcium-binding mitochondrial carrier F55... [more]
CMC1_CAEEL5.164e-1227.14Probable calcium-binding mitochondrial carrier K02... [more]
TPC1_ASPOR6.744e-1226.18Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
ODC_RAT8.808e-1228.41Mitochondrial 2-oxodicarboxylate carrier OS=Rattus... [more]
MPCP_YEAST8.808e-1224.44Mitochondrial phosphate carrier protein OS=Sacchar... [more]
COLT_DROME8.808e-1226.49Congested-like trachea protein OS=Drosophila melan... [more]
YDE9_SCHPO1.150e-1125.54Uncharacterized mitochondrial carrier C12B10.09 OS... [more]
YBT5_SCHPO1.150e-1127.98Uncharacterized mitochondrial carrier C12D12.05c O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
back to top