FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: UCP4_HUMAN (Mitochondrial uncoupling protein 4 OS=Homo sapiens GN=SLC25A27 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 48/188 (25.53%), Postives = 84/188 (44.68%), Query Frame = 1
Query:  256 WQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGA----SRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVP--NNSMAHAVSGVFSTVASDAVITPMDMVKQRL-------QLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            W+ +I G +AG +      P D +K +MQ+ G      +PL   GV  AF+ +L   G  G + G       A   +    + Y+  K +     P  +N M H +S + S + +  + TP D++K R+       Q +   YK   DC+ + +  EG  + Y  +  + +   P+  V + TYE ++
Sbjct:  128 WKSVIGGMMAGVIGQFLANPTDLVKVQMQMEGKRKLEGKPLRFRGVHHAFAKILAEGGIRGLWAGWVPNIQRAALVNMGDLTTYDTVKHYLVLNTPLEDNIMTHGLSSLCSGLVASILGTPADVIKSRIMNQPRDKQGRGLLYKSSTDCLIQAVQGEGFMSLYKGFLPSWLRMTPWSMVFWLTYEKIR 315          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_DEBHA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Debaryomyces hansenii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 48/185 (25.95%), Postives = 82/185 (44.32%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEF 798
            +I+GS +G       YP D L+TR+    A+   H   +     S+ ++ G  GF +G+    L    +  + F  YEL +EF               G  +   +  +  P+D +++R+Q+ S       +  K +  C K +L  EGI  FY  +  +++ +AP  A+   TYE    A+ EF
Sbjct:  129 LIAGSGSGLASTFFTYPFDLLRTRL---AANSEAHFLSMSSTIKSIYEMHGIGGFCKGLTPGLLSVASSTGLMFWSYELAREFSNNYKDVIPFLEGFCGFIAGATAKGLTFPLDTLRKRIQMLSKTRDIDQNSIKAIQLC-KTILKNEGIFGFYKGFSISILKSAPTSAISLFTYEYSLSAIKEF 309          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2539_MOUSE (Solute carrier family 25 member 39 OS=Mus musculus GN=Slc25a39 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 39/149 (26.17%), Postives = 76/149 (51.01%), Query Frame = 1
Query:  361 PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDP 804
            P    G   AF  +++ EG    + G+ A  +   PA A+YF+ Y+  K F  G  + ++  A  V+G  + + +  V++P+++V+ +LQ +   Y+ +A  V+  + + G  + +  +  T + + PF A+++  YE VK  L    P
Sbjct:  101 PTRFTGTLDAFVKIVRHEGTRTLWSGLPATLVMTVPATAIYFTAYDQLKAFLCGQSLTSDLYAPMVAGALARMGTVTVVSPLELVRTKLQAQHVSYRELASSVQAAVTQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLSGLRP 249          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2538_SHEEP (Solute carrier family 25 member 38 OS=Ovis aries GN=SLC25A38 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 38/176 (21.59%), Postives = 81/176 (46.02%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGAS-RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALM 792
            + GSI+G+   +   P+D LKTR+Q +  S       G+     +V++ E   G ++G++   +   P   +YF      K++F  G P  ++   + G  S   +   ++P+ ++K R +     Y+ +   ++ +   EG    ++    T++ +APF  ++   Y   K  ++
Sbjct:   32 LCGSISGTCSTVLFQPLDLLKTRLQTLQPSAHGSRRVGMLALLLTVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVILGAGSRSVAGVCMSPITVIKTRYESGRYGYQSIYAALRSICHSEGFRGLFSGLTATLLRDAPFSGIYLMFYSQTKNVVL 207          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2538_HUMAN (Solute carrier family 25 member 38 OS=Homo sapiens GN=SLC25A38 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 42/189 (22.22%), Postives = 86/189 (45.50%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGAS-RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLV 831
            + GSI+G+   +   P+D LKTR+Q +  S       G+      V++ E   G ++G++   +   P   +YF      K++F  G P  ++   + GV S   +   ++P+ ++K R +     Y+ +   ++ +   EG    ++    T++ +APF  ++   Y   K  +    P+   D +L+
Sbjct:   32 LCGSISGTCSTLLFQPLDLLKTRLQTLQPSDHGSRRVGMLAVLLKVVRTESLLGLWKGMSPSIVRCVPGVGIYFGTLYSLKQYFLRGHPPTALESVMLGVGSRSVAGVCMSPITVIKTRYESGKYGYESIYAALRSIYHSEGHRGLFSGLTATLLRDAPFSGIYLMFYNQTKNIV----PHDQVDATLI 216          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ORNT1_MOUSE (Mitochondrial ornithine transporter 1 OS=Mus musculus GN=Slc25a15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 46/184 (25.00%), Postives = 81/184 (44.02%), Query Frame = 1
Query:  271 SGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQ-----AFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA---VSGVFSTVASDAVITPMDMVKQRLQLKSSPYK--GVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALM 792
            +GS A +   + + P + +K R+Q +            Q         + + +GP GFY G+++  L   P +  +F  YEL + FF  G   + +      +SG F  +     + P+D +K R+Q+ S   K  G+      ++  EGI A Y+  + T+I   P     F  YE  ++ +M
Sbjct:  112 AGSFASAFAALVLCPTELVKCRLQTMYEMETSGKIAASQNTVWSVVKEIFRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGFGGICLWLAVYPVDCIKSRIQVLSMTGKQTGLVRTFLSIVKNEGITALYSGLKPTMIRAFPANGALFLAYEYSRKLMM 295          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC2_MACFA (Calcium-binding mitochondrial carrier protein Aralar2 OS=Macaca fascicularis GN=SLC25A13 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 54/180 (30.00%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP---GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            +++G  AG  + +   P++ +K R+QV G        G R +  SV++  G  G Y+G  A  L   P  A+YF  Y   +  F    G V   S+   ++G  + + + +++TP D++K RLQ+ +    + Y GV DC K++L EEG  A +      V  ++P   V   TYE ++R
Sbjct:  432 ILAGGCAGGSQVIFTNPLEIVKIRLQVAGEIT----TGPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHARASFANEDGQVSPGSLL--LAGAIAGMPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFKKILREEGPKALWKG-AARVFRSSPQFGVTLLTYELLQR 604          

HSP 2 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 51/183 (27.87%), Postives = 82/183 (44.81%), Query Frame = 1
Query:  274 GSIAGSVEHMAMYPVDTLKTRMQVIGAS----RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF---PGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            GS+AG+V   A+YP+D +KTRMQ   ++      L        F  VL+ EG  G YRG+    LG  P  A+  +V +  ++ F    G VP    A  ++G  +  +      P+++VK RLQ+      G       V+ + G    Y   +   + + PF A++F  Y   + +    D
Sbjct:  335 GSVAGAVGATAVYPIDLVKTRMQNQRSTGSFVGELMYKNSFDCFKKVLRYEGFFGLYRGLLPQLLGVAPEKAIKLTVNDFVRDKFMHKDGSVP--LAAEILAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALSVVRDLGFFGIYKGAKACFLRDIPFSAIYFPCYAHARASFANED 515          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ADT4_BOVIN (ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 48/207 (23.19%), Postives = 93/207 (44.93%), Query Frame = 1
Query:  217 KTKETTIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPA----GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNS------MAHAVSGVFSTVASDAVITPMDMVKQRLQL------KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            K  E  + D   F + +++G +A +V    + P++ +K  +QV  +S+ + P     G+      + + +G   ++RG  A  +   P  A+ F+  +  K+ F  GV          +A+  SG  +   S  V+ P+D  + RL        +   +KG+ DC+ ++   +GI   Y  +  +V     ++A +F  Y+ VK  L
Sbjct:   12 KKVEKGLFDATSFGKDLLAGGVAAAVSKTTVAPIERVKLLLQVQASSKQISPEAQYKGIVDCLVRIPREQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQLFMSGVNKEKQFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGADIGKGPEERQFKGLGDCIMKIAKSDGIVGLYQGFGVSVQGIIVYRASYFGAYDTVKGLL 218          

HSP 2 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 48/190 (25.26%), Postives = 79/190 (41.58%), Query Frame = 1
Query:  250 EFWQFMI----SGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPA--GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP----YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            +FW++ +    SG  AG+     +YP+D  +TR+       P      G+      + K +G  G Y+G      G     A YF  Y+  K   P     + +         T  S  +  P D V++R+ ++S      YKG  DC  ++  +EGIGAF+    +  I+     A+    Y+ +K  L
Sbjct:  124 QFWRWFLANLASGGAAGATSLCVVYPLDFARTRLGADIGKGPEERQFKGLGDCIMKIAKSDGIVGLYQGFGVSVQGIIVYRASYFGAYDTVKGLLPKPKETHFLVSFFIAQVVTTCSGILSYPFDTVRRRMMMQSGEAERQYKGTLDCFMKIYQQEGIGAFFRGAFSN-ILRGTGGALVLVLYDKIKDLL 312          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_PICGU (Mitochondrial thiamine pyrophosphate carrier 1 OS=Pichia guilliermondii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 47/171 (27.49%), Postives = 74/171 (43.27%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAV 777
            +I G+ AG    +  YP D L+TR+    A+   H   +      V    G AG Y G     L  G    + F  YE+ +E       N        G F+  +S  +  P+D +++R+Q++SS    +    + +L  EG+  FY  +  ++I  AP  AV    YE V
Sbjct:  121 LIVGTSAGLTSLIVTYPFDLLRTRL---AANSERHFLSMTAVIKQVRASGGLAGLYMGAKPTLLSLGLNSGLMFWTYEIAREVSAQYKDNIPFIEGFCGFFAGASSKGITFPLDTLRKRMQMRSSK-TSIIGLARTILRREGLFGFYKGFGISLIKTAPTSAVSLFVYEVV 287          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: UCP2_CYPCA (Mitochondrial uncoupling protein 2 OS=Cyprinus carpio GN=ucp2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 50/191 (26.18%), Postives = 88/191 (46.07%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASR--------PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHA-VYFSVYELCKEFFPGGVPNNSM-AHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP-----YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            I    A  +  +  +P+DT K R+Q+ G S+        P+   GV    S+++++EGP   Y G+ A GL    + A V   +Y+  K+F+  G  +  + +  ++G  +   + A+  P D+VK R Q ++S      Y G  D  + +  EEG    +      +  NA        TY+ +K AL++
Sbjct:   18 IGAGTAACIADLFTFPLDTAKVRLQIQGESKIPVNTGHGPVKYRGVFGTISTMVRVEGPRSLYSGLVA-GLQRQMSFASVRIGLYDSVKQFYTKGSEHVGIGSRLMAGCTTGAMAVALAQPTDVVKVRFQAQNSAGANKRYHGTMDAYRTIAKEEGFRGLWKGTGPNITRNAIVNCTELVTYDLIKDALLK 207          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
UCP4_HUMAN1.150e-1125.53Mitochondrial uncoupling protein 4 OS=Homo sapiens... [more]
TPC1_DEBHA1.150e-1125.95Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
S2539_MOUSE1.150e-1126.17Solute carrier family 25 member 39 OS=Mus musculus... [more]
S2538_SHEEP1.150e-1121.59Solute carrier family 25 member 38 OS=Ovis aries G... [more]
S2538_HUMAN1.150e-1122.22Solute carrier family 25 member 38 OS=Homo sapiens... [more]
ORNT1_MOUSE1.150e-1125.00Mitochondrial ornithine transporter 1 OS=Mus muscu... [more]
CMC2_MACFA1.150e-1130.00Calcium-binding mitochondrial carrier protein Aral... [more]
ADT4_BOVIN1.150e-1123.19ADP/ATP translocase 4 OS=Bos taurus GN=SLC25A31 PE... [more]
TPC1_PICGU1.502e-1127.49Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
UCP2_CYPCA1.962e-1126.18Mitochondrial uncoupling protein 2 OS=Cyprinus car... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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