FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 51/196 (26.02%), Postives = 83/196 (42.35%), Query Frame = 1
Query:  259 QFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPL----------HPAGVRQAFSSVLKLEGPA-GFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVP-----NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS-------PYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAV 777
            Q + SG++ G    +A YP+D +KTR+ +  A+              P G+ Q  S   +LEG   G YRG+    LG  P  A+ F+VYE  +EF            +++     G  S   +  +  P D++++R Q+ +         Y  V D +  +   EG+  +Y      +    P  AV +  YE V
Sbjct:  124 QRLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGVNSSDAQPSWKSNLYKLTIGAISGGVAQTITYPFDLLRRRFQVLAMGGNELGFRYTSVWDALVTIGRAEGVSGYYKGLAANLFKVVPSTAVSWLVYEVV 319          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TXTP_HUMAN (Tricarboxylate transport protein, mitochondrial OS=Homo sapiens GN=SLC25A1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 49/205 (23.90%), Postives = 95/205 (46.34%), Query Frame = 1
Query:  211 PSKTKETTIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPN-NSMAHAVSGVFSTVASDAVIT-PMDMVKQR-LQLKSSP---YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPN 807
            P+  K    H G    + +++G +AG +E    +P + +KT++Q+   S P    G+       ++  G  G YRG++++  G+ P  AV F ++E             +S    + G+ + VA   V+  PM+ +K + +  ++SP   Y+G    V+ ++ E+G+   Y     TV+     QA+ F    +++      +PN
Sbjct:   15 PASGKAKLTHPG----KAILAGGLAGGIEICITFPTEYVKTQLQLDERSHPPRYRGIGDCVRQTVRSHGVLGLYRGLSSLLYGSIPKAAVRFGMFEFLSNHMRDAQGRLDSTRGLLCGLGAGVAEAVVVVCPMETIKVKFIHDQTSPNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYRGDNPN 215          

HSP 2 Score: 68.1662 bits (165), Expect = 7.457e-11
Identity = 49/180 (27.22%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMY-PVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVI---TPMDMVKQRLQ-LKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            ++ G  AG  E + +  P++T+K +      S      G       +++ +G  G Y+G+ A  L  G   A+ F V    + ++ G  PN  M   ++GVF  +A  A +   TP+D++K R+Q L++  Y+   DC  ++L +EG+ AFY      +       A+ F  Y+ V + L
Sbjct:  125 LLCGLGAGVAEAVVVVCPMETIKVKFIHDQTSPNPKYRGFFHGVREIVREQGLKGTYQGLTATVLKQGSNQAIRFFVMTSLRNWYRGDNPNKPMNPLITGVFGAIAGAASVFGNTPLDVIKTRMQGLEAHKYRNTWDCGLQILKKEGLKAFYKGTVPRLGRVCLDVAIVFVIYDEVVKLL 304          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCFA_DICDI (Mitochondrial substrate carrier family protein A OS=Dictyostelium discoideum GN=mcfA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVS--GVFSTVASDAVITPMDMVKQRLQLKSSP------YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYE 771
            M +G+ +G V     +P+D +KT + VI  +     A ++     + +  G  GF+RG++A  L   P  A+ F+ YE  KE     +  +   +A S  G  S   +  ++ P+D+VK+R+ L+         YK   D + ++   EGI A Y   R   +   P  +++F  YE
Sbjct:  146 MWAGASSGVVSVALTHPLDVIKTHITVIAPTA----ATIKNVTKGIYRDLGIIGFFRGLSAGILNIAPFAALNFTFYETIKEKTQQYILKSPPLYAPSIYGAISGGLTMTILYPLDVVKRRIMLQHFDRNQLPIYKNFIDAIIKITKTEGISALYKGIRPAYLKVIPTVSINFLIYE 318          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 9.739e-11
Identity = 44/181 (24.31%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEF---FPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPY--KGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +W+ +++G +AG++      P D +K  +QV   S   +  GV      +    G   F+RG     +   P  A+ F  Y+  K +   + GG   +++   ++G  +   S   I PM+++K RL L+ +    KG+     ++  +EGI  FY  Y   ++   P+  +    YE++K
Sbjct:  244 WWRHLVAGGVAGAMSRTCTAPFDRIKVYLQV--NSTKTNKLGVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKRWMQEYKGGAELSTIERLLAGSSAGAISQTAIYPMEVMKTRLALRRTGQLDKGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLK 422          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
YP011_YEAST7.457e-1126.02Uncharacterized mitochondrial carrier YPR011C OS=S... [more]
TXTP_HUMAN7.457e-1123.90Tricarboxylate transport protein, mitochondrial OS... [more]
MCFA_DICDI9.739e-1127.12Mitochondrial substrate carrier family protein A O... [more]
CMC3_CAEEL9.739e-1124.31Probable calcium-binding mitochondrial carrier F17... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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