FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCFB_DICDI (Mitochondrial substrate carrier family protein B OS=Dictyostelium discoideum GN=mcfB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 57/204 (27.94%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  256 WQFMISGSIAGSVEHMAMYPVDTLKTRMQV----IGASRPLHPA-GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVIT------PMDMVKQRL--QLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESL 828
            W+ ++SG +AG+V      P++ LK   QV    +  + P +   G+ Q+  ++   EG  GF++G     +   P  A+ F  YE  K F    + NN   H  +     V   A +T      P+D+++ RL  Q+  + Y G+AD  K ++ EEG+   Y     + +  AP+ A++F TYE +K+  +  D      +SL
Sbjct:  139 WKLLLSGGVAGAVSRTCTSPLERLKILNQVGHMNLEQNAPKYKGRGIIQSLKTMYTTEGFIGFFKGNGTNVIRIAPYSAIQFLSYEKYKNFL---LNNNDQTHLTTYENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFGNKYNGIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSL 339          

HSP 2 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 48/187 (25.67%), Postives = 86/187 (45.99%), Query Frame = 1
Query:  247 LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYE-LCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL-----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            L  ++ +  G  AG    +  YP+D +++R+ V       +  G+      +++ EG AG Y+G+ A  LG  P  A+ F+ YE L K F P       +     G  S   +  +  P+D++++RLQ+     K   Y G  D  ++++ +EG+   Y       +   P  ++ F  YE +K+ L
Sbjct:  239 LTTYENLFVGGAAGVTSLLCTYPLDLIRSRLTVQVFGNKYN--GIADTCKMIIREEGVAGLYKGLFASALGVAPYVAINFTTYENLKKTFIPKDTTPTVVQSLTFGAISGATAQTLTYPIDLIRRRLQVQGIGGKDILYNGTFDAFRKIIRDEGVLGLYNGMIPCYLKVIPAISISFCVYEVMKKIL 423          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 54/196 (27.55%), Postives = 93/196 (47.45%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPN-NSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK-SSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            +W+ +++G++AG+V      P+D LK  MQV  +    +   +     S++   G    +RG     L   P  A+ F  YE  K    G     +     V+G  +   +  +I PM+++K RL L+ +  YKG+ DC +R+L  EG  AFY  Y   V+   P+  +  A YE +K   ++   +  +D  ++V
Sbjct:  185 WWKQLVAGAVAGAVSRTGTAPLDRLKVFMQVHASKT--NRLNILGGLRSMVLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLHVQERFVAGSLAGATAQTIIYPMEVLKTRLTLRRTGQYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILV 378          

HSP 2 Score: 69.3218 bits (168), Expect = 3.347e-11
Identity = 46/183 (25.14%), Postives = 84/183 (45.90%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAV-----SGVFSTVASDAVITPMDMVKQRLQLKSS----PYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            ++GS+AG+     +YP++ LKTR+ +    R     G+      +L+ EGP  FYRG     LG  P   +  +VYE  K ++     ++S    +      G  S+        P+ +V+ R+Q ++S    P   +   ++ +L +EG+   Y       +   P  ++ +  YE +K+AL
Sbjct:  284 VAGSLAGATAQTIIYPMEVLKTRLTL---RRTGQYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYPLALVRTRMQAQASIEGGPQLSMLGLLRHILSQEGMRGLYRGIAPNFMKVIPAVSISYVVYENMKQAL 463          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.895e-16
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA--VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            +W+ +++G  AG+V      P+D LK  MQV  ASR  +   V   F+ +++  G    +RG     L   P  A+ F  YE  K    G        H   V+G  +   + + I PM+++K R+ L K+  Y G+ DC +R+L +EG+ AFY  Y   ++   P+  +  A YE +K   ++    + +D  + V
Sbjct:  186 WWRHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRSNNMCIVG-GFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLV-GSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFV 379          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  253 FWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA--VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            +W+ +++G  AG+V      P+D LK  MQV  ASR  +   V   F+ +++  G    +RG     L   P  A+ F  YE  K    G        H   V+G  +   + + I PM+++K R+ L K+  Y G+ DC +++L  EG+ AFY  Y   ++   P+  +  A YE +K A ++    + +D  + V
Sbjct:  186 WWRHLVAGGGAGAVSRTCTAPLDRLKVLMQV-HASRSNNMCIVG-GFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLI-GSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFV 379          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.715e-15
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA-VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            ++W+ +++G +AG+V      P+D LK  MQV G+      A +      ++K  G    +RG     +   P  A+ F  YE  K+ F         A   ++G  +   +   I PM+++K RL + K+  Y G+ DC K+++  EG+ AFY  Y   ++   P+  +  A YE +K
Sbjct:  193 QWWKQLLAGGMAGAVSRTGTAPLDRLKVMMQVHGSKGN---ANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTSIYPMEVLKTRLAVGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPYAGIDLAIYETLK 368          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCAT_RAT (Mitochondrial carnitine/acylcarnitine carrier protein OS=Rattus norvegicus GN=Slc25a20 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.715e-15
Identity = 61/200 (30.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHP---AGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA---VSGVFSTVASDAVITPMDMVKQRLQLKSS----PYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            +++G   G       +P+DT+K R+Q    S P  P   +G    F   L  EG  G YRG+AA  +G  P  AV F  + L K       P + + +     +G+ S V +  ++TP + +K  LQ+++S     Y G  DC K++  E GI  FY     T++ + P   ++F TYE +K     F P   S   L V
Sbjct:   14 LLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKRLQQKS-PEDELTYPQLFTAGMLSGVFTTGIMTPGERIKCLLQIQASSGKNKYSGTLDCAKKLYQEFGIRGFYKGTALTLMRDVPASGMYFMTYEWLKNL---FTPQGKSVHDLSV 209          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA-VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            ++W+ +++G +AG+V      P+D LK  MQV G       + +      ++K  G    +RG     +   P  A+ F  YE  K+ F         A   ++G  +   +   I PM+++K RL + K+  Y G+ DC K+++ +EGI AFY  Y   ++   P+  +  A YE +K
Sbjct:  193 QWWKHLLAGGMAGAVSRTGTAPLDRLKVMMQVHGTKGN---SNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLAGATAQTSIYPMEVLKTRLAVGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPYAGIDLAIYETLK 368          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 51/197 (25.89%), Postives = 94/197 (47.72%), Query Frame = 1
Query:  250 EFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHA-VSGVFSTVASDAVITPMDMVKQRLQL-KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVV 834
            ++W+ +++G +AG+V      P+D LK  MQV G+      + +      ++K  G    +RG     +   P  A+ F  YE  K+ F         A   V+G  +   +   I PM+++K RL + ++  Y G+ DC K+++ +EGI AFY  Y   ++   P+  +  A YE +K   ++      ++  ++V
Sbjct:  193 QWWKQLMAGGMAGAVSRTGTAPLDRLKVMMQVHGSKGN---SNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLAGATAQTSIYPMEVLKTRLAVGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLV 386          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ODC2_YEAST (Mitochondrial 2-oxodicarboxylate carrier 2 OS=Saccharomyces cerevisiae GN=ODC2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.925e-15
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  247 LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPA---------GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVS---GVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRAL 789
            L F    ISG++AG  E   MYP+D +KTR Q +  + P   A         GV      ++K EG +  YRGI++  L   P  A  F+  +  ++ F      N     +S   G  + +   AVI P +++K R+Q   S Y G  DC+K+ +  EGI   Y    +T+  NA +   +F     V+ ++
Sbjct:   10 LPFIYQFISGAVAGISELTVMYPLDVVKTRFQ-LEVTTPTAAAVGKQVERYNGVIDCLKKIVKKEGFSRLYRGISSPMLMEAPKRATKFACNDQYQKIFKNLFNTNETTQKISIAAGASAGMTEAAVIVPFELIKIRMQDVKSSYLGPMDCLKKTIKNEGIMGLYKGIESTMWRNALWNGGYFGVIYQVRNSM 201          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_AJECN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TPC1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.821e-15
Identity = 58/196 (29.59%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP-----------YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE 822
            ISG++AG +   + YP+D L+TR    G  R    A +R +   + + EGP GF+RG  A      P   ++F+ YE  +              A +GV ++V +   + P+D+V++RLQ++              Y+GV   ++ +L  +G    Y     ++I  AP  AV   TYE V   L   D N G DE
Sbjct:  126 ISGAVAGGIATTSTYPLDLLRTRFAAQGNDRIY--ASLRVSVRDIARTEGPHGFFRGATAAIAQIVPYMGLFFAGYEALRSPIASLELPFGTGDAGAGVVASVIAKTGVFPLDLVRKRLQVQGPTRRRYIHTNIPVYEGVYRTIRAILASQGPKGLYRGLTVSLIKAAPASAVTMWTYEHVLGLLK--DMNCGDDE 317          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
MCFB_DICDI3.456e-1627.94Mitochondrial substrate carrier family protein B O... [more]
SCMC3_HUMAN4.513e-1627.55Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE5.895e-1628.93Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_BOVIN7.698e-1628.93Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR1.715e-1527.93Calcium-binding mitochondrial carrier protein SCaM... [more]
MCAT_RAT1.715e-1530.50Mitochondrial carnitine/acylcarnitine carrier prot... [more]
SCM1A_XENLA2.240e-1527.93Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA2.925e-1525.89Calcium-binding mitochondrial carrier protein SCaM... [more]
ODC2_YEAST2.925e-1529.53Mitochondrial 2-oxodicarboxylate carrier 2 OS=Sacc... [more]
TPC1_AJECN3.821e-1529.59Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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