FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2543_MOUSE (Solute carrier family 25 member 43 OS=Mus musculus GN=Slc25a43 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  256 WQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSMAHAVSGVFSTVA---SDAVITPMDMVKQRLQLKSSPY-----------KGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALM 792
            W  +++GS+AG V  +  YP D +KTR+ V     P +  G+  AFS++ + EG    YRG++   LGA P  A    VY   ++ + G  P +  +H  +     VA   S  +  P D VK+++Q + SPY            G ADC ++++  +G+   +      ++   P+  V F+ +E  KR  +
Sbjct:  107 WSSIVTGSLAGMVSTIVTYPTDLIKTRLMVQNVLEPSY-RGLIHAFSTIYQQEGFLALYRGVSLTVLGAVPFSAGSLLVYMNLEKVWNG--PRDRFSHLQNFANVCVAAAVSQTLSFPFDTVKRKMQAQ-SPYLPHYGGVDVHFSGAADCFRQIVKTQGVLGLWNGLTANLLKVVPYFGVMFSMFEFCKRIFL 295          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2536_DANRE (Solute carrier family 25 member 36-A OS=Danio rerio GN=slc25a36a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 55/207 (26.57%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQ---------------VIGAS-RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGV-PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE 822
            + +G   G+V  +   P++ +KTR+Q               V GAS   + P G       +L+ EGP   +RG+    +G  P+ A+YF+ Y   KE       P+++  H +S   +   +     P+ ++K RLQL    +        +CV+RV   +G+  FY     +         +HF  YE++KR L+E   NS  D+
Sbjct:   10 LFAGGCGGTVGAILTCPLEVVKTRLQSSSVTFYISEVQLSTVNGASVARMAPPGPLHCLKLILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSTSKEKLNNVFDPDSTQVHMLSAGLAGFTAITATNPIWLIKTRLQLDARNRGERRMSAFECVRRVYQSDGLRGFYRGMSAS-YAGISETVIHFVIYESIKRKLIEHKANSNMDD 215          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2533_HUMAN (Solute carrier family 25 member 33 OS=Homo sapiens GN=SLC25A33 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 58/203 (28.57%), Postives = 93/203 (45.81%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQ-----------------VIGASRPLHPA----GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            + +G   G+V  +   P++ +KTR+Q                  I  +  + P     G+ Q   S+L+ EGP   +RG+    +G  P+ AVYF+ Y   KE F G  VPN+++ H  S   +   +++++ P+ MVK R+QL    + S       C + V   EGI  FY    T          + FA YE++K+ L E
Sbjct:   15 LFAGGCGGTVGAIFTCPLEVIKTRLQSSRLALRTVYYPQVHLGTISGAGMVRPTSVTPGLFQVLKSILEKEGPKSLFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGIFVPNSNIVHIFSAGSAAFITNSLMNPIWMVKTRMQLEQKVRGSKQMNTLQCARYVYQTEGIRGFYRGL-TASYAGISETIICFAIYESLKKYLKE 216          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2533_DANRE (Solute carrier family 25 member 33 OS=Danio rerio GN=slc25a33 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 59/215 (27.44%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  223 KETTIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGAS-RPLHPA------------------GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            K+T +H        + +G   G+V  +   P++ LKTR+Q  G + RP+                     G+ Q   S+L+ EGP   +RG+    +G  P+ A+YF+ Y   KE F G  VPN+ + H  S  F+   +++++ P+ MVK R+QL    +         C + V   EG+  FY    T          + F  YE +K+ L +
Sbjct:    4 KDTLLH--------LFAGGCGGTVGAIMTCPLEVLKTRLQSSGLTLRPVFQVQLGTLNGAGVIRPGSVTPGLLQVLRSILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSKSKETFNGIFVPNSGVVHMSSAGFAAFITNSLMNPIWMVKTRMQLEKKARGEKKMNALQCARYVYKTEGMRGFYRGL-TASYAGISETMICFLIYETLKKYLAQ 209          

HSP 2 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 53/188 (28.19%), Postives = 80/188 (42.55%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGG------VPNNSMAHAVSGV-----FSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            M S   A  + +  M P+  +KTRMQ+   +R        Q    V K EG  GFYRG+ A   G      + F +YE  K++            N+  A    G+     F+   +  +  P ++++ RL+ + S YK      + V VEEG  AFY      +I   P  A+  +TYE +   L E
Sbjct:  125 MSSAGFAAFITNSLMNPIWMVKTRMQLEKKARGEKKMNALQCARYVYKTEGMRGFYRGLTASYAGISET-MICFLIYETLKKYLAQSRFTTPDTDNDKGASDFLGLMFAAAFAKGCASCIAYPHEVIRTRLREEGSKYKYFFQTARLVAVEEGYAAFYRGLIPQLIRQIPNTAIVLSTYELIVHLLAE 311          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCAT_MACFA (Mitochondrial carnitine/acylcarnitine carrier protein OS=Macaca fascicularis GN=SLC25A20 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 60/185 (32.43%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHP---AGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEF---FPGGV---PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP----YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +++G   G       +P+DT+K R+Q    S P  P   +G    F   L  EG  G YRG+AA  +G  P  AV F  + L K+     P  V   P    A  +SG+F+T     ++TP + +K  LQ+++S     Y G  DC K++  E GI   Y     T++ + P   ++F TYE VK
Sbjct:   14 LLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGIRGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGIFTT----GIMTPGERIKCLLQIQASSGETKYTGTLDCAKKLYQEFGIRGIYKGTVVTLMRDVPASGMYFMTYEWVK 194          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC1_PONAB (Calcium-binding mitochondrial carrier protein Aralar1 OS=Pongo abelii GN=SLC25A12 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = 1
Query:  181 PDFHPEISVNPSKTKETTIHDG-LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP------GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            P+   +++VN     + T  DG +     +++G  AG  + +   P++ +K R+QV G        G R +  +VL+  G  G Y+G  A  L   P  A+YF VY  CK          GG+  N +A   +G  + V + +++TP D++K RLQ+ +    + Y GV DC +++L EEG  AF+      V  ++P   V   TYE ++R
Sbjct:  401 PEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEIT----TGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGL--NLLA---AGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQR 603          

HSP 2 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  274 GSIAGSVEHMAMYPVDTLKTRMQ-------VIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP---GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSG 813
            GS+AG+V   A+YP+D +KTRMQ       V+G    L        F  VL+ EG  G YRG+    +G  P  A+  +V +  ++ F    G VP    A  ++G  +  +      P+++VK RLQ+      G       VL + GI   Y   +   + + PF A++F  Y   K  L + + + G
Sbjct:  333 GSVAGAVGATAVYPIDLVKTRMQNQRGSGSVVGE---LMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVP--LPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVG 517          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: CMC1_HUMAN (Calcium-binding mitochondrial carrier protein Aralar1 OS=Homo sapiens GN=SLC25A12 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.512e-15
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = 1
Query:  181 PDFHPEISVNPSKTKETTIHDG-LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP------GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            P+   +++VN     + T  DG +     +++G  AG  + +   P++ +K R+QV G        G R +  +VL+  G  G Y+G  A  L   P  A+YF VY  CK          GG+  N +A   +G  + V + +++TP D++K RLQ+ +    + Y GV DC +++L EEG  AF+      V  ++P   V   TYE ++R
Sbjct:  401 PEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEIT----TGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGL--NLLA---AGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQR 603          

HSP 2 Score: 73.1738 bits (178), Expect = 2.318e-12
Identity = 56/190 (29.47%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  274 GSIAGSVEHMAMYPVDTLKTRMQ-------VIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFP---GGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSG 813
            GS+AG+V   A+YP+D +KTRMQ       V+G    L        F  VL+ EG  G YRG+    +G  P  A+  +V +  ++ F    G VP    A  ++G  +  +      P+++VK RLQ+      G       VL + GI   Y   +   + + PF A++F  Y   K  L + + + G
Sbjct:  333 GSVAGAVGATAVYPIDLVKTRMQNQRGSGSVVGE---LMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVP--LPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVG 517          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2536_MOUSE (Solute carrier family 25 member 36 OS=Mus musculus GN=Slc25a36 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.112e-14
Identity = 53/199 (26.63%), Postives = 92/199 (46.23%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQ---------------VIGAS--RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGV-PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            + +G   G+V  +   P++ +KTR+Q               + GAS  R + P G      ++L+ EGP   +RG+    +G  P+ A+YF+ Y  CKE   G   P+++  H  S   +   +     P+ ++K RLQL    +     G  +CV++V   +G+  FY     +         +HF  YE++K+ L+E
Sbjct:   10 LFAGGCGGTVGAILTCPLEVVKTRLQSSSVTLYISEVQLNTMAGASVNRVVSP-GPLHCLKAILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNGVFDPDSTQVHMASAAMAGFTAITATNPIWLIKTRLQLDARTRGEKQMGAFECVRKVYQTDGLRGFYRGMSAS-YAGISETVIHFVIYESIKQKLLE 206          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2533_BOVIN (Solute carrier family 25 member 33 OS=Bos taurus GN=SLC25A33 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 58/203 (28.57%), Postives = 93/203 (45.81%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQ------------------VIGASRPLHPA---GVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG-GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALME 795
            + +G   G+V  +   P++ +KTR+Q                  + GA      +   G+ Q   S+L+ EGP   +RG+    +G  P+ AVYF+ Y   KE F G  VPN+++ H  S   +   +++++ P+ MVK R+QL    + S       C + V   EGI  FY    T          + FA YE++K+ L E
Sbjct:   15 LFAGGCGGTVGAIFTCPLEVIKTRLQSSRLALRTVYYPQVHLGTISGAGVVRQTSVTPGLLQVLKSILEKEGPRSLFRGLGPNLVGVAPSRAVYFACYSKAKEQFNGVFVPNSNIVHVFSAGSAAFVTNSLMNPIWMVKTRMQLERKVRGSKQMNTLQCARYVYQTEGIRGFYRGL-TASYAGISETIICFAIYESLKKYLKE 216          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: MCAT_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein OS=Homo sapiens GN=SLC25A20 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.452e-14
Identity = 60/185 (32.43%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHP---AGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEF---FPGGV---PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP----YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +++G   G       +P+DT+K R+Q    S P  P   +G    F   L  EG  G YRG+AA  +G  P  AV F  + L K+     P  V   P    A  +SGVF+T     ++TP + +K  LQ+++S     Y G  DC K++  E GI   Y     T++ + P   ++F TYE +K
Sbjct:   14 LLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGVFTT----GIMTPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLK 194          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
S2543_MOUSE8.512e-1528.50Solute carrier family 25 member 43 OS=Mus musculus... [more]
S2536_DANRE8.512e-1526.57Solute carrier family 25 member 36-A OS=Danio reri... [more]
S2533_HUMAN8.512e-1528.57Solute carrier family 25 member 33 OS=Homo sapiens... [more]
S2533_DANRE8.512e-1527.44Solute carrier family 25 member 33 OS=Danio rerio ... [more]
MCAT_MACFA8.512e-1532.43Mitochondrial carnitine/acylcarnitine carrier prot... [more]
CMC1_PONAB8.512e-1530.19Calcium-binding mitochondrial carrier protein Aral... [more]
CMC1_HUMAN8.512e-1530.19Calcium-binding mitochondrial carrier protein Aral... [more]
S2536_MOUSE1.112e-1426.63Solute carrier family 25 member 36 OS=Mus musculus... [more]
S2533_BOVIN1.452e-1428.57Solute carrier family 25 member 33 OS=Bos taurus G... [more]
MCAT_HUMAN1.452e-1432.43Mitochondrial carnitine/acylcarnitine carrier prot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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