FC878069

Overview
NameFC878069
Unique NameFC878069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_EMENI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Emericella nidulans GN=tpc1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.896e-14
Identity = 54/203 (26.60%), Postives = 94/203 (46.31%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCK-------EFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE 822
            ISG++ G +   A YP+D L+TR    G+        +  +   + K EG  GF+RG +A      P   ++F+ YE  +       E  P  +P  S   A +G+ ++V +   + P+D+V++RLQ++              Y+GV + +  +   +G+   Y     +++  AP  AV   TYE   + L E +  +G DE
Sbjct:  127 ISGALGGGIATAATYPLDLLRTRFAAQGSGDNRVYESLFASLRDIAKTEGTVGFFRGCSAAVGQIVPYMGLFFATYEALRPVMATAPELSPIPLPPGS-GDAAAGIVASVLAKTGVFPLDLVRKRLQVQGPTRALYVHRNIPEYRGVFNTMGLIFRTQGLRGLYRGLTVSLVKAAPASAVTMWTYERALKLLREHEIAAGRDE 328          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_COCIM (Mitochondrial thiamine pyrophosphate carrier 1 OS=Coccidioides immitis GN=TPC1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.896e-14
Identity = 57/195 (29.23%), Postives = 94/195 (48.21%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPNNSM------AHAVSGVFSTVASDAVITPMDMVKQRLQLKS-----------SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            +SG+ AG +     YP D L+TR    G  + ++P+ +  A  S+   EG  GF+RG++A      P   ++F+ YE  +      VP +S+        A +GV ++V +   + P+D+V++RLQ++              Y GV   +K VL + G+   Y     ++I  AP  AV   TYE V + L E +
Sbjct:  128 VSGATAGGIGTFTTYPFDLLRTRFAAQGNDK-IYPS-LLTAIRSIHAHEGSRGFFRGVSAAVAQIVPYMGLFFATYESVR------VPISSLHLPFGSGDATAGVIASVIAKTGVFPLDLVRKRLQVQGPTRSRYIHQNIPEYNGVLSTMKMVLRDGGVRGLYRGLTVSLIKAAPASAVTMWTYERVLKILKEIN 314          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_ASPTN (Mitochondrial thiamine pyrophosphate carrier 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.896e-14
Identity = 54/198 (27.27%), Postives = 95/198 (47.98%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPG--GVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSP-----------YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDE 822
            ++G+ AG +   A YP+D L+TR    G  R      +  +   + ++EGPAGF+RG +A      P   ++F+ YE  +        +P  S   A++G+ ++V +   + P+D+V++RLQ++              Y+GV + +  +L  +G+   Y     ++   AP  AV   TYE   RAL   +  +  DE
Sbjct:  126 VAGASAGGLATAATYPLDLLRTRFAAQGTERVY--TSLLASVRDIARIEGPAGFFRGCSAAVGQIVPYMGLFFATYESLRPSLATVQDLPFGS-GDALAGMIASVLAKTGVFPLDLVRKRLQVQGPTRSRYIHRNIPEYRGVFNTLALILRTQGVRGLYRGLTVSLFKAAPASAVTMWTYEETLRALQAMEVAAQKDE 320          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.477e-14
Identity = 52/196 (26.53%), Postives = 91/196 (46.43%), Query Frame = 1
Query:  232 TIHDGLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVP-----NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL-----------KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYE 771
            +++D  EF    + G +A     + ++PVD L+TR    G  +  +   +R A  ++ + EGP  FY+G+A   +   P   + FS Y   K  +   +P     N ++ + + G  + V S  +  P+D+ K+RLQ+           +   YKG+ DC K+VL +EG   F+     +++  A      F  YE
Sbjct:  111 SVYDAREFSVHFVCGGLAACTATLTVHPVDVLRTRFAAQGEPKVYNT--LRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNENLQNLLCGSGAGVISKTLTYPLDLFKKRLQVGGFEHARAAFGQVRRYKGLMDCAKQVLQKEGALGFFKGLSPSLLKAALSTGFMFFWYE 304          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: ODC_DICDI (Probable mitochondrial 2-oxodicarboxylate carrier OS=Dictyostelium discoideum GN=mcfT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.234e-14
Identity = 56/200 (28.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:  256 WQFMISGSIAGSVEHMAMYPVDTLKTRMQV-IGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFS---VYELCKEFFPGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK--SSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVH 837
            W  ++SG IAG  E + MYP+D +KTR Q+ +G  + +  + V       LK+      YRGI    L   P  A+ F+    YE     + G      M    SGV + +    ++ P ++VK RLQ K  +  Y    DCV +    EG+  F+    +T+  +A +   +F     +K AL    P   +++ ++V+
Sbjct:   24 WHNLVSGGIAGVSEILVMYPLDVVKTRQQLQVGKGQSMMSSLVTMVRHDGLKM------YRGIVPPILVEAPKRAIKFASNKFYEKQILSYCGNTKPTQMQAIGSGVLAGITEAFIVVPFELVKIRLQAKENAGKYTSTMDCVNKTFRAEGLSGFFKGLESTIWRHACWNGGYFGLIHTIKSAL----PKPTTEQGVLVN 213          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: TPC1_SCLS1 (Mitochondrial thiamine pyrophosphate carrier 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=tpc1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  268 ISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAG---PAHAVYFSVYELCKEFFPGG---VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----------KSSP-YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFD 801
            I+G+ AG+V   A YP+D L+TR    G  R      +R +   +   EGP GF++G   +G G G   P   ++F+ YE  +   P G   +P  S   A +GV ++V +   I P D++++RLQ+          K+ P Y GV   ++ ++  EG    Y     ++   AP  AV   TYE V R L++++
Sbjct:  129 IAGASAGAVATTATYPLDLLRTRFAAQGVERIY--TSLRASIRDIAVNEGPRGFFQG---LGAGVGQIIPYMGIFFATYETLR--VPLGTLHMPFGS-GDATAGVLASVIAKTGIFPFDLIRKRLQVQGPTRERYVHKNIPVYNGVFRTMRHIIQNEGYRGLYRGLTVSLFKAAPASAVTMWTYERVLRLLLKWE 315          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.224e-14
Identity = 54/181 (29.83%), Postives = 93/181 (51.38%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF-PGG-------VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            ++SG+IAG+V    + P++T++T + V G+      AGV   F  +++ EG  G +RG A   L   P+ A+    Y+  K+F  P G       +P   +A A++G  ST+ +     PM+++K R+ ++   Y  VA    ++L +EG    Y     ++I   P+ A +F  YE +KR
Sbjct:  138 LVSGAIAGAVSRTFVAPLETIRTHLMV-GSIGVDSMAGV---FQWIMQNEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKFLTPKGDEPPKIPIPTPLVAGALAGFASTLCT----YPMELIKTRVTIEKDVYDNVAHAFVKILRDEGPSELYRGLTPSLIGVVPYAACNFYAYETLKR 310          

HSP 2 Score: 73.9442 bits (180), Expect = 1.359e-12
Identity = 49/198 (24.75%), Postives = 91/198 (45.96%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFF-------PGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS----SPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDES 825
            +++G++AG    +  YP++ +KTR+ +    + ++   V  AF  +L+ EGP+  YRG+    +G  P  A  F  YE  K  +       PG          +      +AS A   P+++ ++++Q+ +      Y+ V   +  +L +EG G  Y     + I   P   + F  YEA K+ L++ +     DE+
Sbjct:  233 LVAGALAGFASTLCTYPMELIKTRVTI---EKDVYD-NVAHAFVKILRDEGPSELYRGLTPSLIGVVPYAACNFYAYETLKRLYRRATGRRPGADVGPVATLLIGSAAGAIASSATF-PLEVARKQMQVGAVGGRQVYQNVLHAIYCILKKEGAGGLYRGLGPSCIKLMPAAGIAFMCYEACKKILVDKEDEEEEDEA 425          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: SAMC_HUMAN (S-adenosylmethionine mitochondrial carrier protein OS=Homo sapiens GN=SLC25A26 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14
Identity = 50/174 (28.74%), Postives = 82/174 (47.13%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVPN--NSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVK 780
            +++G +AG    + ++P+DT+KTR+Q         P G  +A        G  G Y G+ +  +G+ P  A +F  YE  K F      +    M H ++     V +  +  P ++VKQR Q+ +S           +L EEGI   Y  Y++TV+   PF  V F  +E++K
Sbjct:   10 LVAGGVAGVSVDLILFPLDTIKTRLQ--------SPQGFNKA-------GGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTR--TFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLK 166          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: S2536_HUMAN (Solute carrier family 25 member 36 OS=Homo sapiens GN=SLC25A36 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.517e-14
Identity = 52/200 (26.00%), Postives = 92/200 (46.00%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQ---------------VIGAS--RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGV-PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQL----KSSPYKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEF 798
            + +G   G+V  +   P++ +KTR+Q               + GAS  R + P G       +L+ EGP   +RG+    +G  P+ A+YF+ Y  CKE       P+++  H +S   +   +     P+ ++K RLQL    +     G  +CV++V   +G+  FY     +         +HF  YE++K+ L+E+
Sbjct:   10 LFAGGCGGTVGAILTCPLEVVKTRLQSSSVTLYISEVQLNTMAGASVNRVVSP-GPLHCLKVILEKEGPRSLFRGLGPNLVGVAPSRAIYFAAYSNCKEKLNDVFDPDSTQVHMISAAMAGFTAITATNPIWLIKTRLQLDARNRGERRMGAFECVRKVYQTDGLKGFYRGMSAS-YAGISETVIHFVIYESIKQKLLEY 207          
BLAST of FC878069 vs. ExPASy Swiss-Prot
Match: YQ73_SCHPO (Uncharacterized mitochondrial carrier C1442.03 OS=Schizosaccharomyces pombe GN=SPCC1442.03 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.206e-14
Identity = 51/185 (27.57%), Postives = 92/185 (49.73%), Query Frame = 1
Query:  265 MISGSIAGSVEHMAMYPVDTLKTRMQVIGASRPLHPAGVRQAFSSVLKLEGPA-GFYRGIAAMGLGAGPAHAVYFSVYELCKEFFPGGVP-NNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLK---SSP-------YKGVADCVKRVLVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKR 783
            +I+G I G+     M+ +DT+KTR Q    +   +  G+ + +S++L  EG   G Y G+  M +G+ PA A++FS YE  K           ++   ++G    + +  V  P +++K RLQL+   ++P       Y      VK++  +EG+  F+  YR T++ + PF       YE +++
Sbjct:   19 LIAGGIGGATADFLMHSLDTVKTRQQAALYTNKYN--GMVKCYSTILCEEGVFHGLYSGVCPMLIGSLPATALFFSSYEYTKRHLMSNYNLPETLCFLLAGFVGDLFASVVYVPSEVLKTRLQLQGRYNNPHFQSNYNYPSFRGAVKQIAKQEGMKTFFYGYRATILRDIPFSGFQLLFYEKLRQ 201          
The following BLAST results are available for this feature:
BLAST of FC878069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
TPC1_EMENI1.896e-1426.60Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_COCIM1.896e-1429.23Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC1_ASPTN1.896e-1427.27Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
TPC_MACFA2.477e-1426.53Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]
ODC_DICDI3.234e-1428.00Probable mitochondrial 2-oxodicarboxylate carrier ... [more]
TPC1_SCLS14.224e-1430.77Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
BT1_MAIZE4.224e-1429.83Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
SAMC_HUMAN5.517e-1428.74S-adenosylmethionine mitochondrial carrier protein... [more]
S2536_HUMAN5.517e-1426.00Solute carrier family 25 member 36 OS=Homo sapiens... [more]
YQ73_SCHPO7.206e-1427.57Uncharacterized mitochondrial carrier C1442.03 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA69AF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878069 ID=FC878069; Name=FC878069; organism=Citrus clementina; type=EST; length=897bp
TAAAATTATCAGCCAAAAATAATTCAGTGCATGGCGACAAAGTCACCTCC
ATTCGACCCGAAAACGATCTCCAATCACCAAATCCTCCACTCCTATTAAA
CCTTAACAGCACAAGCAACTTCTCGTTATACAAACTTCACCAGTACTATG
GCTACTGACGCCTCCCCCAAATATCGGACCCCCGATTTCCACCCCGAAAT
CTCGGTAAACCCCTCCAAAACAAAAGAAACAACAATACACGACGGCCTCG
AGTTCTGGCAGTTCATGATTTCCGGGTCCATCGCGGGCTCCGTTGAGCAC
ATGGCCATGTACCCAGTTGACACCCTCAAGACCCGCATGCAAGTCATAGG
GGCGTCTCGCCCGCTTCATCCCGCCGGCGTCCGTCAAGCCTTTAGCTCAG
TGCTCAAGCTGGAGGGCCCGGCAGGGTTTTACCGAGGAATTGCAGCTATG
GGACTCGGCGCAGGACCCGCACACGCTGTTTACTTCTCGGTTTACGAGCT
CTGTAAAGAGTTCTTCCCAGGTGGGGTCCCTAATAACTCAATGGCTCACG
CTGTGTCGGGTGTCTTCTCGACGGTGGCGAGTGATGCTGTGATTACGCCC
ATGGATATGGTGAAGCAGAGGCTTCAGCTCAAGAGCAGTCCGTACAAGGG
AGTCGCAGACTGTGTCAAGAGAGTGTTAGTTGAGGAAGGAATCGGCGCGT
TTTACGCTTCATATAGGACTACGGTGATCATGAACGCGCCGTTTCAAGCA
GTTCATTTCGCCACTTATGAGGCAGTAAAGAGAGCTTTGATGGAATTTGA
CCCAAACAGTGGGAGTGATGAGAGTTTAGTGGTTCATGCAACAGCCGGTG
CGGCTGCCGGAGCTCTGGCCGCTACCTTGACGACGCCACTTGATGTT
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